View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2909_low_17 (Length: 247)

Name: NF2909_low_17
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2909_low_17
NF2909_low_17
[»] chr7 (1 HSPs)
chr7 (24-240)||(6572652-6572868)
[»] chr3 (12 HSPs)
chr3 (26-240)||(6838255-6838469)
chr3 (24-240)||(8472020-8472236)
chr3 (23-205)||(4388326-4388508)
chr3 (24-204)||(5268515-5268695)
chr3 (24-215)||(8568327-8568518)
chr3 (36-204)||(5250640-5250808)
chr3 (25-88)||(6947729-6947792)
chr3 (28-208)||(5299194-5299374)
chr3 (28-88)||(6448288-6448348)
chr3 (29-88)||(6553944-6554003)
chr3 (134-204)||(6245884-6245954)
chr3 (29-170)||(6736454-6736595)
[»] scaffold0425 (1 HSPs)
scaffold0425 (29-88)||(6983-7042)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 6572868 - 6572652
Alignment:
Q  24 ggtcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacag 123  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||| |||| ||| ||    
T  6572868 ggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctgattattgatacttggttgtcgttgtctttgtatgaaag 6572769  T
Q  124 caaatagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatctttttgaggattgcaggcta 223  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||  |||||||||||  ||||||||||||||||| |||||    
T  6572768 caaatggttgattatttcttctttctcaccctctctaccatatatgcaagatttatccaccagagatgcagttggcgatctttttgaggattgctggcta 6572669  T
Q  224 actgcactttcataact 240  Q
    ||||||| |||| ||||    
T  6572668 actgcaccttcaaaact 6572652  T

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Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 6838469 - 6838255
Alignment:
Q  26 tcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagca 125  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  6838469 tcattgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagca 6838370  T
Q  126 aatagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatctttttgaggattgcaggctaac 225  Q
    ||||||| |||||||||||||| | ||| |||||||||  |||| |||||||||||||||| |||||||||||| ||||||||||||||||  |||||||    
T  6838369 aatagttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttggagatctttttgaggattgtgggctaac 6838270  T
Q  226 tgcactttcataact 240  Q
     || | |||||||||    
T  6838269 cgcgccttcataact 6838255  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 8472020 - 8472236
Alignment:
Q  24 ggtcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacag 123  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||||||||| ||||  || ||    
T  8472020 ggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccactatgctgatagttgatacttggttgccattgtcgttgtaagaaag 8472119  T
Q  124 caaatagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatctttttgaggattgcaggcta 223  Q
    |||||| ||||||| ||||||||||| ||| |||||||||  |||| ||||||||||||| || |||||||||||  ||||||| |||||||||||||||    
T  8472120 caaatacttgattaattcttctttgtcaccttctctaccacgtatggaagattcatccactaaagatgcagttggcgatcttttcgaggattgcaggcta 8472219  T
Q  224 actgcactttcataact 240  Q
    ||||||| |||||||||    
T  8472220 actgcaccttcataact 8472236  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 4388508 - 4388326
Alignment:
Q  23 cggtcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgaca 122  Q
    ||||||||||| |||||||| ||||| |||||||| ||||| ||||| | |||||||||||||||| ||| |||||| |||||  ||||  |||| ||||    
T  4388508 cggtcattgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacttggttgccgctgtctatgtcagaca 4388409  T
Q  123 gcaaatagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatctt 205  Q
    | ||| |||||| ||  || ||||||| ||| | ||||||||||||||  ||| |||||||||| |||| |||||||||||||    
T  4388408 gtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaagatgtagttggaaatctt 4388326  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 5268515 - 5268695
Alignment:
Q  24 ggtcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacag 123  Q
    |||||||||| || || || ||||| |||||||| ||||| ||||| | |||||||||||||||| ||| ||| || ||||| |||||  |||| |||||    
T  5268515 ggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggtacatggttgcccttgtctatgtcagacag 5268614  T
Q  124 caaatagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatct 204  Q
     ||| | |||||||  || || |||| ||| ||||||||||||||||  |||||||||||||| |||| |||||| |||||    
T  5268615 taaaaaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatgtagttggcaatct 5268695  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 8568518 - 8568327
Alignment:
Q  24 ggtcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacag 123  Q
    ||||||||||||||||  | ||||| |||||||| ||||||||||| | |||||| || || |||      || || ||||||   || |||||| | ||    
T  8568518 ggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaag 8568419  T
Q  124 caaatagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatctttttgaggatt 215  Q
    |||||| ||||||||||  | ||| | | | |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  8568418 caaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaagacgcagttggcaatctttttgaggatt 8568327  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 5250640 - 5250808
Alignment:
Q  36 caagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagcaaatagttgat 135  Q
    ||||||| ||||| |||||||| ||||| ||||| | |||||||||||||||| ||| ||| || |||||| |||   |||| ||||| ||| | |  ||    
T  5250640 caagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaat 5250739  T
Q  136 tatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatct 204  Q
    ||  || || |||| ||| ||||||||||||||||  |||||||||||||| | || ||||||||||||    
T  5250740 taactcctccttgtcaccatctctaccatatatgctcgattcatccaccaaagctgtagttggaaatct 5250808  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 6947729 - 6947792
Alignment:
Q  25 gtcattgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgatt 88  Q
    ||||||||| |||||||  ||||| ||||| ||||||||||| || ||||||||||||||||||    
T  6947729 gtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6947792  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 5299194 - 5299374
Alignment:
Q  28 attgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagcaaa 127  Q
    |||||| ||||| || ||||| ||||| || ||||| ||||| | |||||||||||||||| ||| |||  | | ||||   ||  |||| || || |||    
T  5299194 attgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaa 5299293  T
Q  128 tagttgattatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatcttttt 208  Q
     | ||| ||| ||| ||||||| ||| ||||| ||||||||||  |||||||||||||| |||| | |||| |||||||||    
T  5299294 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatcttttt 5299374  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 6448348 - 6448288
Alignment:
Q  28 attgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgatt 88  Q
    |||||| |||||||  ||||  |||||||| ||||||||||||| ||||||||||||||||    
T  6448348 attgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgatt 6448288  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 6554003 - 6553944
Alignment:
Q  29 ttgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgatt 88  Q
    ||||| |||||||  ||||| ||||| ||||||||||| || ||||||||||||||||||    
T  6554003 ttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6553944  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 6245884 - 6245954
Alignment:
Q  134 attatttcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggaaatct 204  Q
    |||||||||||||| | |  |||||||||||||||   ||||||| ||||||| |||||||||| ||||||    
T  6245884 attatttcttctttctcatgctctctaccatatatcacagattcagccaccaaagatgcagttgaaaatct 6245954  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 6736454 - 6736595
Alignment:
Q  29 ttgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagcaaat 128  Q
    ||||| |||||||  ||||| ||||| ||||||||||| || |||||||||||||| ||| |||  || || |||||| |||| ||| |||  || |||     
T  6736454 ttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctaattattggaacctggttgccactgtcattgcctgtaagtaaaa 6736553  T
Q  129 agttgattatttcttctttgttaccctctctaccatatatgc 170  Q
    | ||||||| || ||| || | | | ||||||||||||||||    
T  6736554 acttgattagtttttccttatcatcatctctaccatatatgc 6736595  T

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Target: scaffold0425 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 7042 - 6983
Alignment:
Q  29 ttgtagacaagctgtgcaagtgtggtcttccccatcccacccaaacccactatgctgatt 88  Q
    ||||| |||||||  ||||| ||||| ||||||||||| || ||||||||||||||||||    
T  7042 ttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6983  T

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