View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_19 (Length: 239)
Name: NF2909_low_19
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 47016411 - 47016201
Alignment:
| Q |
16 |
tgcgtttgtattcatactaagaagcattatcctatttgtttattttgagaaacggaaatgttacttgtgtcagttgtcacttaaaaa-tgactcgcagca |
114 |
Q |
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| T |
47016411 |
tgcgtttgtattcatactaagaagcattatcctatttgtttattttgagaaacggaaatgttacttgtgtcagttgtcacttaaaaaatgactcgcagca |
47016312 |
T |
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| Q |
115 |
atatcacgagcacgtaattgagaatctagagcatgactcgcagaaatatcacgaacacgtaattgagaatctagagcacgactcgcagcaatatcacgaa |
214 |
Q |
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| T |
47016311 |
ataccacgagcacgtaattgagaatctagagcatgactcgcagatatatcacgaacacgtaattgagaatctagagcacgactcgcagcaatatcacgaa |
47016212 |
T |
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| Q |
215 |
cacgtaattga |
225 |
Q |
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| T |
47016211 |
cacgtaattga |
47016201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 47016279 - 47016192
Alignment:
| Q |
102 |
atgactcgcagcaatatcacgagcacgtaattgagaatctagagcatgactcgcagaaatatcacgaacacgtaattgagaatctaga |
189 |
Q |
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| T |
47016279 |
atgactcgcagatatatcacgaacacgtaattgagaatctagagcacgactcgcagcaatatcacgaacacgtaattgagaatctaga |
47016192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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