View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_21 (Length: 237)
Name: NF2909_low_21
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 40862820 - 40863002
Alignment:
| Q |
37 |
gagtcatgcaaagatgacgaattcacagaaacaattgaaataagactgaaaatggctgaaaatcactaatttaactnnnnnnnnnnnnnnnnnnnctatt |
136 |
Q |
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| T |
40862820 |
gagtcatgcaaagatgacgaattcacataaacaattgaaataagattaaaaatggctgaaaatcactaatttaactaaaaaaaaagaaaaaaaa-ctatt |
40862918 |
T |
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| Q |
137 |
tagaaagatgattttggatcaaaattgaccctaaattgcctcctcttgctagacaagaagaagaaaggtggtgatgactagagt |
220 |
Q |
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| T |
40862919 |
tagaaaggtgattttgggtcaaaattgaccctaaatcgcctcctcttgctaaacaaaaagaagaaaggtggtgatgactagagt |
40863002 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 48212361 - 48212289
Alignment:
| Q |
138 |
agaaagatgattttggatcaaaattgaccctaaattgcctcctcttgctagacaagaagaagaaaggtggtga |
210 |
Q |
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| T |
48212361 |
agaaagttgattttgaatcaaaattgacactaaattatctttttttgttagacaagaagaaaaaaggtggtga |
48212289 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 17116410 - 17116477
Alignment:
| Q |
43 |
tgcaaagatgacgaattcacagaaacaattgaaataagactgaaaatggctgaaaatcactaatttaa |
110 |
Q |
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| T |
17116410 |
tgcaaagacgacgaaatcacataaacaaacgaaagaagactgaaaatatgtgaaaatcactaatttaa |
17116477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 25961941 - 25961881
Alignment:
| Q |
143 |
gatgattttggatcaaaattgaccctaaattgcctcctcttgctagacaagaagaagaaagg |
204 |
Q |
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| T |
25961941 |
gatgattctggatcaaaattgaccctaaatcaccctct-ttgatagacaagaagaagaaagg |
25961881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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