View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2909_low_24 (Length: 227)

Name: NF2909_low_24
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2909_low_24
NF2909_low_24
[»] chr6 (7 HSPs)
chr6 (3-131)||(6825445-6825573)
chr6 (7-131)||(8655765-8655888)
chr6 (10-80)||(24249800-24249870)
chr6 (3-68)||(6823035-6823100)
chr6 (3-68)||(4555745-4555810)
chr6 (47-124)||(787416-787494)
chr6 (7-68)||(30689634-30689695)
[»] scaffold0001 (2 HSPs)
scaffold0001 (3-131)||(146657-146785)
scaffold0001 (3-68)||(144661-144726)
[»] chr5 (8 HSPs)
chr5 (7-130)||(21254225-21254348)
chr5 (7-80)||(26873149-26873222)
chr5 (31-131)||(41951667-41951768)
chr5 (7-68)||(21256697-21256758)
chr5 (29-121)||(35309093-35309186)
chr5 (30-68)||(43233925-43233963)
chr5 (31-68)||(41949333-41949370)
chr5 (7-67)||(4730680-4730741)
[»] chr8 (10 HSPs)
chr8 (7-131)||(7277686-7277810)
chr8 (46-121)||(3788446-3788522)
chr8 (3-80)||(13856744-13856821)
chr8 (47-103)||(35416054-35416110)
chr8 (7-61)||(3567495-3567549)
chr8 (30-109)||(26174366-26174445)
chr8 (7-69)||(7275143-7275205)
chr8 (25-131)||(4676256-4676363)
chr8 (39-69)||(12464815-12464845)
chr8 (31-68)||(5690859-5690896)
[»] chr2 (5 HSPs)
chr2 (7-124)||(24038340-24038458)
chr2 (7-69)||(31269462-31269524)
chr2 (7-68)||(31180294-31180355)
chr2 (7-68)||(24039535-24039596)
chr2 (7-68)||(36402684-36402744)
[»] chr1 (7 HSPs)
chr1 (7-131)||(18705644-18705769)
chr1 (55-131)||(9908118-9908194)
chr1 (44-101)||(29849956-29850011)
chr1 (44-131)||(20226758-20226844)
chr1 (30-68)||(2427331-2427369)
chr1 (33-123)||(35270047-35270138)
chr1 (30-80)||(26231106-26231155)
[»] chr7 (6 HSPs)
chr7 (7-124)||(41830277-41830395)
chr7 (7-68)||(8083389-8083450)
chr7 (7-69)||(41832683-41832745)
chr7 (55-131)||(34510821-34510897)
chr7 (53-98)||(9457775-9457820)
chr7 (29-68)||(25432166-25432205)
[»] chr4 (5 HSPs)
chr4 (3-68)||(2547093-2547158)
chr4 (44-131)||(55851928-55852016)
chr4 (7-131)||(5440902-5441028)
chr4 (7-68)||(35783798-35783859)
chr4 (7-68)||(5444797-5444859)
[»] chr3 (17 HSPs)
chr3 (3-68)||(782838-782903)
chr3 (7-80)||(19954439-19954512)
chr3 (46-123)||(20868825-20868902)
chr3 (46-130)||(51306477-51306562)
chr3 (7-68)||(10018777-10018838)
chr3 (7-68)||(10123317-10123378)
chr3 (7-68)||(10256091-10256152)
chr3 (7-68)||(10179974-10180035)
chr3 (10-68)||(10514351-10514409)
chr3 (55-131)||(52737765-52737842)
chr3 (12-68)||(10661756-10661812)
chr3 (10-68)||(10511027-10511084)
chr3 (88-131)||(4602423-4602467)
chr3 (10-68)||(10613346-10613404)
chr3 (31-68)||(17743104-17743141)
chr3 (31-68)||(19044424-19044461)
chr3 (29-69)||(548457-548497)
[»] scaffold1412 (1 HSPs)
scaffold1412 (78-131)||(1798-1851)
[»] scaffold0023 (1 HSPs)
scaffold0023 (7-68)||(111544-111605)
[»] scaffold0862 (1 HSPs)
scaffold0862 (7-69)||(299-361)
[»] scaffold0525 (1 HSPs)
scaffold0525 (7-68)||(2028-2089)
[»] scaffold0959 (1 HSPs)
scaffold0959 (13-68)||(408-463)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 6825573 - 6825445
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaac 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6825573 ttctatcaatacaaagagtttgttagatttatctccttccttccatggatgccatgtttcctaacatggtattagagcatgattggtatccaccttgaac 6825474  T
Q  103 aatttttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||||||    
T  6825473 aatttttccgctgcattttctcgagaaaa 6825445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 8655888 - 8655765
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaatt 106  Q
    ||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |   ||||| ||||||||||  | |    
T  8655888 atcaatagaaagagtttcttagttttctctccttccttctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaagga-t 8655790  T
Q  107 tttccgctgcattttctcgagaaaa 131  Q
    |||||  ||||||||||||||||||    
T  8655789 tttcccttgcattttctcgagaaaa 8655765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 24249800 - 24249870
Alignment:
Q  10 aatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 80  Q
    ||||||||||||||||||| |||||||| ||| || ||| |||||||||||||||||||||||||||||||    
T  24249800 aatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaacatggtatcagagc 24249870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 6823100 - 6823035
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||    
T  6823100 ttctatcaatacaaagagtttgttagatttatctccttccttccatgaatgtcatgttttctaaca 6823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 4555745 - 4555810
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||||||||||||||||  |||||||  || ||||||||||||||||||||||    
T  4555745 ttctatcaatacaaagagtttgttagattttgctccttcgatctatggatgccatgtttcctaaca 4555810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 787416 - 787494
Alignment:
Q  47 atggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttctc 124  Q
    ||||||| |||||||||||||||||||||||||||    ||||||||||||||||  || |||||||||||||||||||    
T  787416 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttctc 787494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 30689695 - 30689634
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||||||||| |||| |||||||| |||||| |||||||||||||||||||||||    
T  30689695 atcaatagaaagagtttcttagttttctctcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 146785 - 146657
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaac 102  Q
    ||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  146785 ttctatcaatataaagagtttgttagatttatctccttccttctatagatgccatgtttcctaacatggtatcaaagcatgattggtatccaccttgaac 146686  T
Q  103 aatttttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||||||    
T  146685 aatttttccgctgcattttctcgagaaaa 146657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 144726 - 144661
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  144726 ttctatcaatataaagagtttgttagatttatctccttccttccatagatgccatgtttcctaaca 144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 21254225 - 21254348
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaatt 106  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21254225 atcaatagaaagagtttgttacttttctctccttccttccatggatgccatgtttcctaacatggtatcatagcatgattggtatccaccttgaacaatt 21254324  T
Q  107 tttccgctgcattttctcgagaaa 130  Q
    ||||||||||||||||||||||||    
T  21254325 tttccgctgcattttctcgagaaa 21254348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 26873222 - 26873149
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 80  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26873222 atcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 26873149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 41951768 - 41951667
Alignment:
Q  31 ttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgat-tggtatccaccttgaacaat-ttttccgctgcattttctcgaga 128  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| | || |||||||| |||||||  || |||||||||||||||||||||||    
T  41951768 ttctctcattccttccatggatgccatgtttcctaacatggtattagagc-taatctggtatccgccttgaaggatattttccgctgcattttctcgaga 41951670  T
Q  129 aaa 131  Q
    |||    
T  41951669 aaa 41951667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 21256697 - 21256758
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21256697 atcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 21256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 35309186 - 35309093
Alignment:
Q  29 atttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgat-tggtatccaccttgaacaat-ttttccgctgcatttt 121  Q
    |||| |||| |||||||  |||||  |||||||||||||||||||||||||| | || ||||||||||||||||  || ||||||||||||||||    
T  35309186 atttttctcattccttcattggatatcatgtttcctaacatggtatcagagc-taatctggtatccaccttgaaggatattttccgctgcatttt 35309093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 43233925 - 43233963
Alignment:
Q  30 tttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  43233925 tttctctcattccttccatggatgccatgtttcctaaca 43233963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 41949370 - 41949333
Alignment:
Q  31 ttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  41949370 ttctctcattccttccatggatgccatgtttcctaaca 41949333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 4730680 - 4730741
Alignment:
Q  7 atcaatacaaagagtttgttagatttct--ctccttccttccatggatgccatgtttcctaac 67  Q
    |||||||||||||||||||||| ||| |  ||||||| | |||||||||||||||||||||||    
T  4730680 atcaatacaaagagtttgttagctttttttctccttcat-ccatggatgccatgtttcctaac 4730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 7277810 - 7277686
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaatt 106  Q
    ||||||| ||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7277810 atcaatagaaagagtttcttagttttctctccttctttccatggataccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaatt 7277711  T
Q  107 tttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||    
T  7277710 tttccgctgcattttctcgagaaaa 7277686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 3788522 - 3788446
Alignment:
Q  46 catggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcatttt 121  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3788522 catggatgccatgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcatttt 3788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 13856744 - 13856821
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 80  Q
    |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  13856744 ttctatcaatacaaagtgttcgttagttttctctccttctttccatggatgtcatgtttcataacatggtatcagagc 13856821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 35416110 - 35416054
Alignment:
Q  47 atggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaaca 103  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  35416110 atggatgccatgtttcttaacatggtatcagagcataattggtatccaccttgaaca 35416054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 3567549 - 3567495
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgttt 61  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| |||||||    
T  3567549 atcaatacaaagagtttgttagatttctttccttccttccacggatgtcatgttt 3567495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 26174366 - 26174445
Alignment:
Q  30 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaattttt 109  Q
    |||||||| |||||||| |||||  ||||||| |||||||||||||||| ||    ||||||||||||||||||||||||    
T  26174366 tttctctcattccttccttggatatcatgtttactaacatggtatcagaacaaatatggtatccaccttgaacaattttt 26174445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 7275205 - 7275143
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacat 69  Q
    ||||||| ||||||||| |||| |||||||||||| || ||||||| ||||||||||||||||    
T  7275205 atcaatagaaagagtttcttagttttctctccttcttttcatggataccatgtttcctaacat 7275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 4676256 - 4676363
Alignment:
Q  25 ttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat--ttttccgctgcattttc 122  Q
    |||| |||||||| |||||||  |||||  |||||||||||| |||||||||||||     ||||||||||||||||  ||  |||||||||||||||||    
T  4676256 ttagttttctctcattccttcg-tggatatcatgtttcctaatatggtatcagagctaacctggtatccaccttgaaggatatttttccgctgcattttc 4676354  T
Q  123 tcgagaaaa 131  Q
    | |||||||    
T  4676355 ttgagaaaa 4676363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 12464815 - 12464845
Alignment:
Q  39 ttccttccatggatgccatgtttcctaacat 69  Q
    |||||||||||||||||||||||||||||||    
T  12464815 ttccttccatggatgccatgtttcctaacat 12464845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 5690859 - 5690896
Alignment:
Q  31 ttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  5690859 ttctctcattccttccatggatgccatgtttcataaca 5690896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 24038340 - 24038458
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat- 105  Q
    ||||||| ||| ||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||  ||     
T  24038340 atcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaaggata 24038439  T
Q  106 ttttccgctgcattttctc 124  Q
    |||||||||||||||||||    
T  24038440 ttttccgctgcattttctc 24038458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 31269524 - 31269462
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacat 69  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  31269524 atcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaacat 31269462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 31180294 - 31180355
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  31180294 atcaatagaaagagtttcttagttttctctccttccttccatggatgccatgcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 24039535 - 24039596
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||| ||||| |||| |||||||| ||||||||||||||||||||||| ||||||    
T  24039535 atcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 36402744 - 36402684
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||| |||||    
T  36402744 atcaatacaaagagtttgt-agatttctctccttcattccatggatatcatgtttcataaca 36402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 18705769 - 18705644
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgat-tggtatccaccttgaa-caa 104  Q
    ||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| | || ||||||||||||||||  |     
T  18705769 atcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgttttctaacatggtatcagagc-taatctggtatccaccttgaaggat 18705671  T
Q  105 tttttccgctgcattttctcgagaaaa 131  Q
    ||||||||||||||||||| |||||||    
T  18705670 tttttccgctgcattttctagagaaaa 18705644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 9908194 - 9908118
Alignment:
Q  55 catgtttcctaacatggtatcagagcatgat-tggtatccaccttgaacaatttttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||| | || |||||||||||||||| || |||||||||||| ||||| |||||||    
T  9908194 catgtttcctaacatggtatcagagc-taatctggtatccaccttgaagaaattttccgctgcactttcttgagaaaa 9908118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 29850011 - 29849956
Alignment:
Q  44 tccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaa 101  Q
    ||||||||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  29850011 tccatggatgccatgtttcataacatggtatcagagca--aatggtatccaccttgaa 29849956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 20226844 - 20226758
Alignment:
Q  44 tccatggatgccatgtttcctaacatggtatcagagcatgat-tggtatccaccttgaacaatttttccgctgcattttctcgagaaaa 131  Q
    |||||| ||||| |||||||||||||||||||||||| | || |||||||| |||||||  | |||||||||||||||||| |||||||    
T  20226844 tccatgaatgccgtgtttcctaacatggtatcagagc-taatctggtatcctccttgaagga-ttttccgctgcattttcttgagaaaa 20226758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 2427331 - 2427369
Alignment:
Q  30 tttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  2427331 tttctctcattccttccatggatgccatgtttcctaaca 2427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 35270138 - 35270047
Alignment:
Q  33 ctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgatt-ggtatccaccttgaacaat-ttttccgctgcattttct 123  Q
    ||||| || ||||||||||||| ||||||  ||||||||||||||||| || || || ||||||||||||  || ||||||||||||||||||    
T  35270138 ctctcttttcttccatggatgc-atgttttataacatggtatcagagcctggtttggcatccaccttgaatgatattttccgctgcattttct 35270047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 26231155 - 26231106
Alignment:
Q  30 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 80  Q
    |||||||||||| | |||||||||||||||||| |||||| ||||||||||    
T  26231155 tttctctccttcat-ccatggatgccatgtttcataacatagtatcagagc 26231106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 41830277 - 41830395
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat- 105  Q
    ||||||| ||||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||    |||||||||||||||||  ||     
T  41830277 atcaatagaaagagtttcttagttttctctcattccttccatggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaaggata 41830376  T
Q  106 ttttccgctgcattttctc 124  Q
    |||||||||||||||||||    
T  41830377 ttttccgctgcattttctc 41830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 8083450 - 8083389
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  8083450 atcaatagaaagagttttttagttttctctccttccttccatggatgccatgtttcctaaca 8083389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 41832683 - 41832745
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacat 69  Q
    ||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  41832683 atcaatagaaagagtttcttagttttctctcattccttccatggatgccatgtttcctaacat 41832745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 34510821 - 34510897
Alignment:
Q  55 catgtttcctaacatggtatcagagcatgat-tggtatccaccttgaacaatttttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||  | ||||||||||||||||||||||||||    
T  34510821 catgtttcctaacatggtatcagagc-taatctggtatccaccttgaaggaattttccgctgcattttctcgagaaaa 34510897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 9457775 - 9457820
Alignment:
Q  53 gccatgtttcctaacatggtatcagagcatgattggtatccacctt 98  Q
    ||||| ||| |||||||||||| |||||||||||||||||||||||    
T  9457775 gccatattttctaacatggtattagagcatgattggtatccacctt 9457820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 25432166 - 25432205
Alignment:
Q  29 atttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  25432166 atttctctcattccttccatggatgccatgtttcataaca 25432205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 2547093 - 2547158
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2547093 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca 2547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 55852016 - 55851928
Alignment:
Q  44 tccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||  || |||||||||||||||||| |||||||    
T  55852016 tccatggatgccatgtttcctaacatcgtatcagagcaagattggtatccacctcgaatgatattttccgctgcattttctagagaaaa 55851928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 5440902 - 5441028
Alignment:
Q  7 atcaatacaaagagtttgttagatttct-ctccttccttccatggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat 105  Q
    |||||||||||||||||||||| ||| | ||||||| ||  || |||||||||||||||||||||||||||||||     |||||||||  |||||  ||    
T  5440902 atcaatacaaagagtttgttagtttttttctccttctttttatagatgccatgtttcctaacatggtatcagagctaacctggtatccattttgaaggat 5441001  T
Q  106 -ttttccgctgcattttctcgagaaaa 131  Q
     |||||| |||||||||||||||||||    
T  5441002 attttcccctgcattttctcgagaaaa 5441028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 35783798 - 35783859
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||||||||||| |||  ||||||| |||||||||||||||||||| |||||    
T  35783798 atcaatacaaagagtttgttagtttttcctccttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 5444797 - 5444859
Alignment:
Q  7 atcaatacaaagagtttgttagattt-ctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||||||||||| ||| | ||||||| |||||| |||||||||||||||||||    
T  5444797 atcaatacaaagagtttgttagtttttccctccttctttccatagatgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 782903 - 782838
Alignment:
Q  3 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  782903 ttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca 782838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 19954512 - 19954439
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 80  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  19954512 atcaatacaaagagattgttagatttctctccttccttccatggatgtcatgtttcataacatggtatcagagc 19954439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 20868825 - 20868902
Alignment:
Q  46 catggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaatttttccgctgcattttct 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  20868825 catggatgccatgtttcccaacatggtatcagagcatgattggtatccaccttgaaacaattttccgctgcattttct 20868902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 51306477 - 51306562
Alignment:
Q  46 catggatgccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaa-tttttccgctgcattttctcgagaaa 130  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  51306477 catggatgtcatgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcattttctcgggaaa 51306562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 10018838 - 10018777
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10018838 atcaatacaaagagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10018777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 10123378 - 10123317
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  10123378 atcaatacaaagagtttgttagttttctctccttcttttcatggatgccatgtttcctaaca 10123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 10256152 - 10256091
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10256152 atcaatacaaaaagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10256091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 10180035 - 10179974
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||    
T  10180035 atcaatacaaagagtttgttagttttctctccttcttttcatggatgtcatgtttcctaaca 10179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 10514409 - 10514351
Alignment:
Q  10 aatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||||    
T  10514409 aatacaaagagtttattagttttctctccttctttccatggatgccatgattcctaaca 10514351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 52737842 - 52737765
Alignment:
Q  55 catgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttctcgagaaaa 131  Q
    |||||||||||||||||||||||||||    ||||||||||||||||  || |||||||||||||||||| |||||||    
T  52737842 catgtttcctaacatggtatcagagcaaatctggtatccaccttgaaggatattttccgctgcattttcttgagaaaa 52737765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 10661812 - 10661756
Alignment:
Q  12 tacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||    
T  10661812 tacaaagagtttgttagttttctctcattctttccatggatgtcatgtttcctaaca 10661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 10511084 - 10511027
Alignment:
Q  10 aatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||    
T  10511084 aatacaaagagtttgttagttttctctcattctttccatagatg-catgtttcctaaca 10511027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 4602423 - 4602467
Alignment:
Q  88 gtatccaccttgaac-aatttttccgctgcattttctcgagaaaa 131  Q
    ||||||||||||||  |||||||||||||||||||||||||||||    
T  4602423 gtatccaccttgaaggaatttttccgctgcattttctcgagaaaa 4602467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 10613404 - 10613346
Alignment:
Q  10 aatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||||||||||||||| |||||||| ||| ||| ||||||| |||| |||| ||||    
T  10613404 aatacaaagagtttgttagttttctctcattctttctatggatgtcatgattcccaaca 10613346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 17743104 - 17743141
Alignment:
Q  31 ttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  17743104 ttctctcattcctttcatggatgccatgtttcctaaca 17743141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 19044424 - 19044461
Alignment:
Q  31 ttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  19044424 ttctctcattcctttcatggatgccatgtttcctaaca 19044461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 548457 - 548497
Alignment:
Q  29 atttctctccttccttccatggatgccatgtttcctaacat 69  Q
    ||||||||| |||||||||||||||||| |||| |||||||    
T  548457 atttctctcattccttccatggatgccaagttttctaacat 548497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 1851 - 1798
Alignment:
Q  78 agcatgattggtatccaccttgaacaatttttccgctgcattttctcgagaaaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1851 agcatgattggtatccaccttgaacaatttttccgctgcattttctcgagaaaa 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 111605 - 111544
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  111605 atcaataaaaagagtttattaaatttctctccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 299 - 361
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacat 69  Q
    ||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  299 atcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgtttcctaacat 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 2089 - 2028
Alignment:
Q  7 atcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  2089 atcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 463 - 408
Alignment:
Q  13 acaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 68  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  463 acaacgagtttgttagatttctctcattccttccatggatgccttgtttcctaaca 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University