View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2909_low_27 (Length: 208)

Name: NF2909_low_27
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2909_low_27
NF2909_low_27
[»] chr7 (13 HSPs)
chr7 (15-193)||(4697870-4698048)
chr7 (26-193)||(4863147-4863314)
chr7 (23-193)||(4784523-4784693)
chr7 (23-193)||(4816952-4817122)
chr7 (24-194)||(4846710-4846880)
chr7 (53-189)||(4712784-4712920)
chr7 (52-185)||(4642970-4643103)
chr7 (72-151)||(4671940-4672019)
chr7 (52-145)||(4661110-4661203)
chr7 (57-185)||(4666201-4666329)
chr7 (24-185)||(4630175-4630336)
chr7 (52-151)||(4636157-4636256)
chr7 (57-148)||(4652823-4652914)
[»] chr4 (1 HSPs)
chr4 (24-121)||(18926428-18926525)
[»] chr6 (1 HSPs)
chr6 (33-152)||(5479308-5479427)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 4697870 - 4698048
Alignment:
Q  15 gatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697870 gatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacaaggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtc 4697969  T
Q  115 acattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtgg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697970 acattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtgg 4698048  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 4863314 - 4863147
Alignment:
Q  26 acctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttg 125  Q
    |||||| || ||||||||| | ||||| ||||||||||| ||| |||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||    
T  4863314 acctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgagatcgaattactctctcagcttcgtcatattcacttg 4863215  T
Q  126 gtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtgg 193  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||    
T  4863214 gtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatgacttcatgcaacgtgg 4863147  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 4784523 - 4784693
Alignment:
Q  23 tacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcac 122  Q
    |||||| || || ||||||||| | ||||| ||||||||||| ||||| ||||||||| ||||||| || |||||||||||||| |||||||| ||||||    
T  4784523 tacaccagttgcgataaaacgtcttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcac 4784622  T
Q  123 ttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtgg 193  Q
    |||||||| || |||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||    
T  4784623 ttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtgg 4784693  T

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Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 4816952 - 4817122
Alignment:
Q  23 tacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcac 122  Q
    |||||| || || ||||||||| | ||||| ||||||||||| ||||| ||||||||| ||||||| || |||||||||||||| |||||||| ||||||    
T  4816952 tacaccagttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcac 4817051  T
Q  123 ttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtgg 193  Q
    |||||||| || |||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||    
T  4817052 ttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtgg 4817122  T

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Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 4846710 - 4846880
Alignment:
Q  24 acacctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcact 123  Q
    |||||||| || |||||||||   ||||||||||||| | | ||| |||| || |||||||||||||||||| |||||||||| |||||||| |||||||    
T  4846710 acacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcact 4846809  T
Q  124 tggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtggt 194  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||    
T  4846810 tggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggt 4846880  T

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Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 4712784 - 4712920
Alignment:
Q  53 gggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaa 152  Q
    |||||||| ||| ||| |||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||    
T  4712784 gggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaa 4712883  T
Q  153 ggtgcagagatgattctcgtttacgacttcatggaac 189  Q
    | ||||||||||||||| ||||| ||||| |||||||    
T  4712884 gatgcagagatgattcttgtttatgactttatggaac 4712920  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 4643103 - 4642970
Alignment:
Q  52 cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga 151  Q
    |||| |||||||| ||||  |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||| | ||||||||||||||    
T  4643103 cgggctctcaacaaggtgccaacgagttcatgaatgaaatcgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacga 4643004  T
Q  152 aggtgcagagatgattctcgtttacgacttcatg 185  Q
     |   ||||||||||| | ||||| || ||||||    
T  4643003 tgacacagagatgattttggtttatgagttcatg 4642970  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 4672019 - 4671940
Alignment:
Q  72 aacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga 151  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || ||| ||||||||||| ||||    
T  4672019 aacgagttcatgaacgaaatcgagttactctctcaacttcgccacattcacttggtatccctcgttggatattgcgacga 4671940  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 4661203 - 4661110
Alignment:
Q  52 cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattg 145  Q
    |||| |||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| || ||||| ||||||||    
T  4661203 cgggctctcaacaaggtgtcaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcatttggtgtccctcatgggatattg 4661110  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 4666329 - 4666201
Alignment:
Q  57 tctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtg 156  Q
    |||||||| ||||  |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || ||  | ||||||||||| || |       
T  4666329 tctcaacaaggtgccaacgagttcatgaacgaaatcgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgaca 4666230  T
Q  157 cagagatgattctcgtttacgacttcatg 185  Q
    ||||||||||||| ||||| || ||||||    
T  4666229 cagagatgattctggtttatgagttcatg 4666201  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 4630336 - 4630175
Alignment:
Q  24 acacctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcact 123  Q
    |||||||| || ||||||||  | ||| | || |||||||| ||||  |||||||||||||| ||||||||||||||||| || ||||| ||||||||||    
T  4630336 acacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcact 4630237  T
Q  124 tggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatg 185  Q
    |||| || ||  | ||||||||||| ||     ||||||||||||| ||||| || ||||||    
T  4630236 tggtgtcccttgtaggatattgcaatgacaacacagagatgattctggtttatgagttcatg 4630175  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 4636256 - 4636157
Alignment:
Q  52 cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga 151  Q
    |||| |||||||| |||| ||| ||||||||||| || |||||||||||||| || ||||| |||||||||||||| || ||  | ||||||||||||||    
T  4636256 cgggctctcaacaaggtgcaaatgagttcatgaacgagatcgagttgctctcccagcttcgccacattcacttggtatcccttgtgggatattgcaacga 4636157  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 4652914 - 4652823
Alignment:
Q  57 tctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaa 148  Q
    |||||||| ||||  ||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||| || ||| | |||||||||||    
T  4652914 tctcaacaaggtgccaacgagttcatgaatgagatcgagttactctcccagcttcgccacattcacttggtatccctcgtgggatattgcaa 4652823  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 18926428 - 18926525
Alignment:
Q  24 acacctgtagcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattca 121  Q
    ||||| || |||||||||||| | ||||| || |||||||| || |  ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  18926428 acacccgttgcaataaaacgtctcaaaccaggctctcaacaaggggccaacgagttcatgaatgagatcgagttgctctctcaacttcgccacattca 18926525  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 5479308 - 5479427
Alignment:
Q  33 gcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctc 132  Q
    |||||||||||  | ||||||||||| ||||| |||| ||| |||||||| |||||||||||  |||||||  | |||||||| |||||  | ||||||     
T  5479308 gcaataaaacggcttaaaccgggttcacaacaaggtgaaaatgagttcatcaatgaaatcgacatgctctcgaagcttcgtcatattcatcttgtttctt 5479407  T
Q  133 tcattggatattgcaacgaa 152  Q
    | ||||| || |||||||||    
T  5479408 tgattggttactgcaacgaa 5479427  T

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