View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_3 (Length: 623)
Name: NF2909_low_3
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 30082038 - 30081443
Alignment:
| Q |
17 |
actttttcccttctannnnnnngtcctctgtcaagaagtttgttttctgtaatttagttaccaccatgtaactgctttcctatagatcccaaagcttatt |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30082038 |
actttttcccttctatttttttgtcctctgtcaagaagtttgttttctgtaatttagttaccaccatgtaactgctttcctatagatcccaaagcttatt |
30081939 |
T |
|
| Q |
117 |
gttctacacctctacggctttcttttattatgattnnnnnnnggcaagagtttttgttaggaaatattgtaatacaaacatgcagctgcattgcaattct |
216 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30081938 |
gttccacacctctacggctttcttttataatgattaaaaaaaggcaagagtttttgttaggaaatattgtaatacaaacatgcagctgcattgcaattct |
30081839 |
T |
|
| Q |
217 |
ttgagcatgttttgtctgttgtttttcctactgagcttatttgtgggtggctatttacctgttatcgtagtaaaatatctccctagctaatggaggagga |
316 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30081838 |
ttgagcatgtt--gtctgttgttttttctactgagcttatttgtgggtggctatttacctgttatcgtagtagaatatctccctagctaatggaggagga |
30081741 |
T |
|
| Q |
317 |
aatagtctagaatctagatagatgctctagccggattttatcgaattggaatgatacaggttttgaatactagaccctgctaggatccaaaagggacttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30081740 |
aatagtctagaatctagatagatgctctagccggattttatcgaattggaatgatacaagttttgaatactagaccctgctaggatccaaaagggacttc |
30081641 |
T |
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| Q |
417 |
cccactaaaagggatgtagagttctatttctcacatacaacaccaatgatctctactggtgtcatttatcattaaggatttattatatactccaacgttg |
516 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30081640 |
cccactaaaagggatgttgagttctatttctcacatacaacaccaatgatctctactggtgtcatttatcattaaggatttattatatactccaacgttg |
30081541 |
T |
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| Q |
517 |
taaacttatagcgtcaatacataaaaattaaattgtatatcattaataaatacaggataacccttttctagtggctgtcttctactcaattcctatgc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
30081540 |
taaacttatagcgtcaatacataaaaattaaattgtatatcattaataaatacaggataaccctgttctagtggctgtcttctactaaattcctatgc |
30081443 |
T |
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