View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_5 (Length: 498)
Name: NF2909_low_5
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 42133838 - 42133351
Alignment:
| Q |
1 |
ctcctcaacctgttcatttctgtacagtttttatttatgacccacaattatgtggtattagtgaatgcaattacattaatttgactattttcattctact |
100 |
Q |
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| T |
42133838 |
ctcctcaacctgttcatttctgtacagtttttatttatgacccacaattatgtggtattagtgaatgcaattacattaatttgactattttcattctact |
42133739 |
T |
|
| Q |
101 |
ttttatgacagcgatggtgtagccttttcgctgagagactgcaaagatttaccttggctgtccaaatatcttatgtaagaatggaaatttgattatgctc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133738 |
ttttatgacagcgatgatgtagccttttcgctgagagactgcaaagatttaccttggctgtccaaatatcttatgtaagaatggaaatttgattatgctc |
42133639 |
T |
|
| Q |
201 |
ttaaagaacattttttcctaataacttatgttaannnnnnnattatttacataattgttaccatctccggtactattatgaagacaagtgttagcatctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133638 |
ttaaagaacattttttcctaataacttatgttaatttttttattatttacataattgttaccatctccggtactattatgaagacaagtgttagcatctg |
42133539 |
T |
|
| Q |
301 |
ttgtatgttggtccttgggggtggtctgtctatgtattacacatgtattaggctttgtattacctgttgcagcccacaaaagaggggcatctcagccaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42133538 |
ttgtatgttggtccttgggggtggtctgtctatgtattacacatgtattaggccttgtattacctgttgcaacccacaaaagaggggcatctcagccaca |
42133439 |
T |
|
| Q |
401 |
ctattatgacactcttgtatctttcacatatcagaattaataatacagtttattatttcaattttctcagtttctccttttgtctctg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133438 |
ctattatgacactcttgtatctttcacatatcagaattaataatacagtttattatttcaattttctcagtttctccttttgtctctg |
42133351 |
T |
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