View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_7 (Length: 376)
Name: NF2909_low_7
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 43094519 - 43094173
Alignment:
| Q |
18 |
atagttgacatacattgagtaaaattgtgaattaatgttattaccaccttatataagaaatgcttaacaaaagtagtagagcaaatgacaattttcacgg |
117 |
Q |
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| T |
43094519 |
atagttgacatacattgagtaaaattgtgcattaatgttattaccacct-atatgagaaatgcttaacaaaagtagtagagcaaatgacatttttcacgg |
43094421 |
T |
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| Q |
118 |
atcattagtttttaggtagaaaaacaaaaggttggcatcgcaaaaccataagtattttagcaaagtttcaataaaatatatacttgacgttgattttaat |
217 |
Q |
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| T |
43094420 |
atcattagtttttaggtagaaaaacaaaaggttggcatcgcaaaaccataagtattttagcaaagtttcaataaaatatatacttgacgttgattttaat |
43094321 |
T |
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| Q |
218 |
tagctttcatttgtttggaactaaaattacgccttttattctcttattttctcttttcctctttgtaaaaactacaacaaacaagaatgcagcgcaatcc |
317 |
Q |
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| T |
43094320 |
tagctttcatttgtttggaactaaaattacgccttttattctcttattttctcttttcctctttgcaaaaactacaacaaacaagaatgcagcgcaatcc |
43094221 |
T |
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| Q |
318 |
acccaattcatctgcatttttcattcaccttcacaaacctcaaccatt |
365 |
Q |
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| T |
43094220 |
acccaattcatctgcatttttcattcaccttgacaaacctcaaccatt |
43094173 |
T |
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