View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2909_low_9 (Length: 333)
Name: NF2909_low_9
Description: NF2909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2909_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 48544422 - 48544141
Alignment:
| Q |
10 |
attatactgcacagtgagaaccataattgaaagagagaactctactctaagacaactgtacaatatgaacacgtttaccaaaaaagaaagaaataacagt |
109 |
Q |
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| T |
48544422 |
attatactgaacagtgagaaccataattgaaagagagaactcta-----agacaactgtacaatatgaacacgtttaccaaaaaagaaagaaataacagt |
48544328 |
T |
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| Q |
110 |
aacgacaaggacaaaataattatttgatcatcaattattcaccagcacaagaatatctgtgttagccttgaaacaaaactattgaagtaaatactttaat |
209 |
Q |
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| T |
48544327 |
aacgacaagtacaaaataattatttgatcatcaattattcaccagcacaagaatatctgtgttagccttgaaacaaaactattgaagtaaatac-----t |
48544233 |
T |
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| Q |
210 |
ttatcagcaagtggaccaatacctgctctaaatatctctgtagagcatctattccttacaagtgttttatttagtgtcctcagattaagtaaatctatgt |
309 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48544232 |
ttatcagcaagtggaccaatacctgctctaaatagctctgtag--------------acaagtgttttatttagtgtcctcagattaagtaaatctatgt |
48544147 |
T |
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