View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_high_2 (Length: 463)
Name: NF2910_high_2
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_high_2 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 5985 - 5541
Alignment:
| Q |
1 |
accagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctcccttggcatcttaataatcttatctgcaggctcggtgtcacccggg |
100 |
Q |
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| T |
5985 |
accagggagtgtggagtattgcataagatgtttgcatccagcaatgaagatctcccttggcatcttaataatcttatctgcaggctcggtgtcacccggg |
5886 |
T |
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| Q |
101 |
tcggtgctaattcctggaaggaatttttcaggagagtagtcattcgctatctttgaataaagtttcacaaattcttcagatgtttgtacaattttagttt |
200 |
Q |
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| T |
5885 |
tcggtgctaattcctggaaggaatttttcaggagagtagtcattcgctatctttgaataaagtttcacaaattcttcagatgtttgtacaattttagttt |
5786 |
T |
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| Q |
201 |
ggttgtataacttgtagtcaaccaaattaatattgtccttgttttcccaatacaatttgcggtaatgcgaatcattttgctcggatggagcaatggacac |
300 |
Q |
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| T |
5785 |
ggttgtataacttgtagtcaaccaaattaatattgtccttgttttcccaatacaatttgcggtaatgcgaatcattttgctcggatggagcaatggacac |
5686 |
T |
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| Q |
301 |
aacattgatattcagatctctatctttcttgagatctgttataacttgccctaagcactccgcgaaacgacatcgatctttatcaacacttgtgaggatg |
400 |
Q |
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| T |
5685 |
aacattgatattcagatctctatctttcttgagatctgttataacttgccctaagcactccgcgaaacgacatcgatctttatcaacacttgtgaggatg |
5586 |
T |
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| Q |
401 |
tgctcataattgatgtcaataccatcaattatacttctgccactt |
445 |
Q |
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| T |
5585 |
tgctcataattgatgtcaataccatcaattatacttctgccactt |
5541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 16282 - 16242
Alignment:
| Q |
26 |
agatgtttgcagccagcaatgaagatctcccttggcatctt |
66 |
Q |
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| T |
16282 |
agatgtctgcagccagcaatgaagtgctcccttggcatctt |
16242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 26450 - 26410
Alignment:
| Q |
26 |
agatgtttgcagccagcaatgaagatctcccttggcatctt |
66 |
Q |
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| T |
26450 |
agatgtctgcagccagcaatgaagtgctcccttggcatctt |
26410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 36616 - 36576
Alignment:
| Q |
26 |
agatgtttgcagccagcaatgaagatctcccttggcatctt |
66 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| |
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| T |
36616 |
agatgtctgcagccagcaatgaagtgctcccttggcatctt |
36576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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