View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_high_3 (Length: 361)
Name: NF2910_high_3
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 35648962 - 35648809
Alignment:
| Q |
15 |
cattaactcccatcagagacaagaaaggtaactctccaaaaaatagtttgtttaaagagctgaaaaaatggtaatccattagtataatgtaatatatact |
114 |
Q |
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| T |
35648962 |
cattaactcccatcagagacaagaagggtaactctccaaaaaatagtttgtttaaagagctgaaaaaatggtaatccattagtataatgtaatatatact |
35648863 |
T |
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| Q |
115 |
acaaccaagttctttaaaacaagcatcataaagtaggtattgtattagtccatg |
168 |
Q |
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| T |
35648862 |
acaaccaagttctttaaaacaagcatcataaagtgagtattgtattagtccatg |
35648809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 35648738 - 35648634
Alignment:
| Q |
240 |
cccaagaatgttcagatggacataaataaacatcgtggcacattctcaattaccatttagaagttaccattcacttttaaccccacgtatatactttata |
339 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
35648738 |
cccaagaatgttcagatggacataaa----catcgtggcacattttcaattaccatttagaacttaccattcacttttaaccccacgtatatacttgatc |
35648643 |
T |
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| Q |
340 |
cttcagttc |
348 |
Q |
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||||||||| |
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| T |
35648642 |
cttcagttc |
35648634 |
T |
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