View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_high_4 (Length: 360)
Name: NF2910_high_4
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 2760667 - 2760348
Alignment:
| Q |
18 |
atctatgacatacgataattaacttgcataatgctcttagtaagagattggtttccactgtagatgactatctgcaatcactggaactttcctccacaac |
117 |
Q |
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| T |
2760667 |
atctatgacatacgataattaacttgcataatgctcttagtaagagattggtttccactgtagatgactatctgcaatcattggaactttcctccacaac |
2760568 |
T |
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| Q |
118 |
taatttagctttttacttctttacctaaaattttgaatcttgtcattattctttggaggataaacttgattagcttttatggaaacatttaaattccgat |
217 |
Q |
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| T |
2760567 |
taatttagctttttacttctttacctaaaattttgaatcttgtcattattctttggaggataaacttgattagcttttatggaaacattcaaattccgat |
2760468 |
T |
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| Q |
218 |
gacttgcagttgaatgaaatattattttttggagattgatgcatggaaagatctccacttatgagaatttggcaatgagagggtgccagatgctctcgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2760467 |
gacttgcagttgaatgaaatattattttttggagattgatgcatggaaagatctccacttatgagaatttggcaatgagagggtgccagatgctctcgtt |
2760368 |
T |
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| Q |
318 |
gtcaataatgtagaaagttc |
337 |
Q |
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|||||||||||||||||||| |
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| T |
2760367 |
gtcaataatgtagaaagttc |
2760348 |
T |
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