View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2910_high_6 (Length: 306)
Name: NF2910_high_6
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 27440722 - 27440998
Alignment:
| Q |
20 |
ttatagacacaacgagcatcatacaaatttttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440722 |
ttatagacacaacgagcatcatacaaattcatatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaa |
27440821 |
T |
|
| Q |
120 |
aggaatccatgtgagtgcatggtcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440822 |
aggaatccatgtgagtgcatggtcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgag |
27440921 |
T |
|
| Q |
220 |
gctagaaagaagagtgtagcccaggtgcagttgattattttatttcaaattatttttaatgataactatgacctatg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440922 |
gctagaaagaagagtgtagcccaggtgcagttgattattttatttcaaattatttttaatgataactatgacctatg |
27440998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 54 - 281
Target Start/End: Original strand, 27443574 - 27443801
Alignment:
| Q |
54 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactagga |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27443574 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaactcagagaattctgcaagcagaaaggaattcatgtgagtgcatggtcaccactagga |
27443673 |
T |
|
| Q |
154 |
ggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagttga |
253 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
27443674 |
ggatacaaactaagttttggttcgcctgcagtgatggagaattcaattctgcgagaaattgctgaggctagaaagaaaagtgtagcccaggtgcagctca |
27443773 |
T |
|
| Q |
254 |
ttattttatttcaaattatttttaatga |
281 |
Q |
| |
|
||||||||||||||| |||||| ||||| |
|
|
| T |
27443774 |
ttattttatttcaaactattttcaatga |
27443801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 41 - 265
Target Start/End: Original strand, 27429294 - 27429518
Alignment:
| Q |
41 |
tacaaatttttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatg |
140 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27429294 |
tacaaatttttgtttggatttaggtggagatgaacccatcatggcaacaggggaaactaagagaattctgcaagcagaaaggaatccatgtgagtgcatg |
27429393 |
T |
|
| Q |
141 |
gtcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcc |
240 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
27429394 |
gtcaccactaggaggatacaaactaagttggggttcgcctacagtgatggagaatccaattctgcacgaaattgcagaggctagaaagaagagtgtagcc |
27429493 |
T |
|
| Q |
241 |
caggtgcagttgattattttatttc |
265 |
Q |
| |
|
||||||||| | ||||||||||||| |
|
|
| T |
27429494 |
caggtgcagctcattattttatttc |
27429518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 26911221 - 26911095
Alignment:
| Q |
50 |
ttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccact |
149 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||||| | ||||| || |||||||||| | |||||||||| |||||| |||||||||||||| | |
|
|
| T |
26911221 |
ttatttggatttaggtagaaatgaatccatcttggcatcaagaaaaactcagggaattctgcatgaagaaaggaattcatgtgtgtgcatggtcaccatt |
26911122 |
T |
|
| Q |
150 |
aggaggctacaaactaagttggggttc |
176 |
Q |
| |
|
|||| |||||| || ||||||||| |
|
|
| T |
26911121 |
gggagcatacaaagtattttggggttc |
26911095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 26911093 - 26911054
Alignment:
| Q |
210 |
aattgctgaggctagaaagaagagtgtagcccaggtgcag |
249 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
26911093 |
aattgctgaggctagaaataagagtgtagctcaggtgcag |
26911054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University