View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2910_low_1 (Length: 480)

Name: NF2910_low_1
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2910_low_1
NF2910_low_1
[»] chr1 (7 HSPs)
chr1 (149-236)||(23900179-23900266)
chr1 (16-93)||(23900037-23900114)
chr1 (352-419)||(23900379-23900446)
chr1 (16-54)||(24968811-24968849)
chr1 (16-54)||(25431848-25431886)
chr1 (37-69)||(24968769-24968801)
chr1 (37-69)||(25431896-25431928)
[»] chr8 (2 HSPs)
chr8 (91-190)||(27275068-27275167)
chr8 (113-176)||(29712760-29712821)
[»] chr4 (1 HSPs)
chr4 (113-190)||(55802632-55802708)
[»] chr6 (2 HSPs)
chr6 (115-190)||(4123700-4123775)
chr6 (115-166)||(4131399-4131450)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 23900179 - 23900266
Alignment:
Q  149 accaatatattcaaaacaaaatatttaagtacaccaattattgtccgtgcttgtcgcacgggtagacgtctagttattaatattatta 236  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23900179 accaatatattcaaaacaatatatttaagtacatcgattattgtccgtgcttgtcgcacgggtagacgtctagttattaatattatta 23900266  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 23900037 - 23900114
Alignment:
Q  16 catatttcttccaatcttgacggttttgcatcttttccctatcatcggttctttctttctagttgtacactgtctata 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23900037 catatttcttccaatcttgacggttttgcatcttttccctatcatcggttctttctttccagttgtacactgtctata 23900114  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 23900379 - 23900446
Alignment:
Q  352 cagaaagccaccctgtgactgtgaggctcccnnnnnnncagaagccaattagctcttttgtttgatca 419  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  23900379 cagaaagccaccctgtgactgtgaggctcccaaaaaaacagaagccaattagctcttttgtttgatca 23900446  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 24968849 - 24968811
Alignment:
Q  16 catatttcttccaatcttgacggttttgcatcttttccc 54  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  24968849 catatttcttccaatcttgacggttttgcttcttttccc 24968811  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 25431848 - 25431886
Alignment:
Q  16 catatttcttccaatcttgacggttttgcatcttttccc 54  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  25431848 catatttcttccaatcttgacggttttgcttcttttccc 25431886  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 24968801 - 24968769
Alignment:
Q  37 ggttttgcatcttttccctatcatcggttcttt 69  Q
    |||||||||||||||||||||||||| ||||||    
T  24968801 ggttttgcatcttttccctatcatcgtttcttt 24968769  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 25431896 - 25431928
Alignment:
Q  37 ggttttgcatcttttccctatcatcggttcttt 69  Q
    |||||||||||||||||||||||||| ||||||    
T  25431896 ggttttgcatcttttccctatcatcgtttcttt 25431928  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 27275068 - 27275167
Alignment:
Q  91 atactcaagcacctannnnnnnaaggtctaaattgaaagcgcgaccaatattattcacaccaatatattcaaaacaaaatatttaagtacaccaattatt 190  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  27275068 atactcaagcacctatttttttaaggtctaaattgaaagcgcgaccaatattattcacaccaatatattcaagacaatatatttaagtacaccgattatt 27275167  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 29712821 - 29712760
Alignment:
Q  113 aaggtctaaattgaaagcgcgaccaatattattcacaccaatatattcaaaacaaaatatttaa 176  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||    
T  29712821 aaggtctaaattgaaagcgcaaccaatattattcacac--atatattcaaaacaatatatttaa 29712760  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 55802632 - 55802708
Alignment:
Q  113 aaggtctaaattgaaagcgcgaccaatattattcacaccaatatattcaaaacaaaatattt-aagtacaccaattatt 190  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||| ||||||||| ||||||    
T  55802632 aaggtctaaattgaaagcgcaaccaatattattcacac--atatattcaaaacaatatatttaaagtacaccgattatt 55802708  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 4123700 - 4123775
Alignment:
Q  115 ggtctaaattgaaagcgcgaccaatattattcacaccaatatattcaaaacaaaatatttaagtacaccaattatt 190  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||||  ||||| ||||||| | ||||||    
T  4123700 ggtctaatttgaaagcgcgaccaatattatccacaataatatattcaaaacagtatattgaagtacatcgattatt 4123775  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 4131399 - 4131450
Alignment:
Q  115 ggtctaaattgaaagcgcgaccaatattattcacaccaatatattcaaaaca 166  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  4131399 ggtctaatttgaaagcgcggccaatattattcacaacaatatattcaaaaca 4131450  T

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