View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2910_low_11 (Length: 289)

Name: NF2910_low_11
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2910_low_11
NF2910_low_11
[»] chr6 (16 HSPs)
chr6 (7-161)||(17095606-17095768)
chr6 (7-229)||(16870317-16870529)
chr6 (72-255)||(17066986-17067177)
chr6 (7-66)||(16655782-16655841)
chr6 (159-229)||(16558631-16558701)
chr6 (109-229)||(16655604-16655728)
chr6 (151-227)||(16984995-16985068)
chr6 (7-64)||(16784994-16785051)
chr6 (13-76)||(16794920-16794983)
chr6 (7-64)||(16778898-16778955)
chr6 (43-108)||(16985125-16985190)
chr6 (7-71)||(17067196-17067260)
chr6 (23-66)||(16558479-16558522)
chr6 (188-229)||(16784821-16784862)
chr6 (35-80)||(16841534-16841579)
chr6 (34-87)||(16975726-16975779)
[»] chr3 (2 HSPs)
chr3 (15-242)||(7055669-7055894)
chr3 (7-76)||(38941733-38941802)
[»] scaffold0256 (1 HSPs)
scaffold0256 (7-64)||(6881-6938)
[»] scaffold0133 (4 HSPs)
scaffold0133 (7-64)||(6222-6279)
scaffold0133 (7-76)||(10558-10627)
scaffold0133 (25-76)||(15855-15906)
scaffold0133 (160-214)||(6069-6120)
[»] chr8 (1 HSPs)
chr8 (15-121)||(13375738-13375853)
[»] chr2 (1 HSPs)
chr2 (20-67)||(20151580-20151627)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 17095768 - 17095606
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggt 106  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  17095768 ggagaagagatgtaagagaggaataggtgaagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggt 17095669  T
Q  107 aa--------aatttaatgaatctctttacttgttcatttatcttttgtcttactatatcaaa 161  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17095668 aatttaatttaatttaatgaatctctttacttgttcatttatcttttgtcttactatatcaaa 17095606  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 16870317 - 16870529
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggt 106  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||| |||||    
T  16870317 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt 16870416  T
Q  107 aaaatttaatgaatctctttacttgttcatttatcttttgtcttact---atatcaaattatatagtgtgattttagacttattatattgaacaatgtgt 203  Q
      ||||||||       || |    ||| ||| |||||||| |||||   |||| |||||| || |||||||| ||||||||||||||||||||||||||    
T  16870417 --aatttaat-------ttga----ttcctttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgt 16870503  T
Q  204 gctgagaatatcaaatcagcatggaa 229  Q
    || || ||||||| ||||||||||||    
T  16870504 gcagataatatcatatcagcatggaa 16870529  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 17067177 - 17066986
Alignment:
Q  72 aattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctctttacttgtt--catttatcttttgtcttactata---tcaaatt 163  Q
    ||||| ||||||||| |||||||||| || |||||||   ||||||| ||||||||| | || ||  | ||| | |||||||||||||||   | |||||    
T  17067177 aattgcaatctgatgcaaaaccaacaatttgtggtaatttaatttaacgaatctcttaattttttttcctttcttttttgtcttactatagaataaaatt 17067078  T
Q  164 atatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaatacggggaagcaattctggcaccgcc 255  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||| ||||| ||||||||    
T  17067077 atatactgtgattttagacttattatattgaacaatgtgtgcagagaatattaaatcagcatggaattgggggaagcgattcttgcaccgcc 17066986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 16655841 - 16655782
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctga 66  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  16655841 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctga 16655782  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 16558631 - 16558701
Alignment:
Q  159 aaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaa 229  Q
    |||||| || |||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  16558631 aaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatcatatcagcatggaa 16558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 16655728 - 16655604
Alignment:
Q  109 aatttaatgaatctctttacttg-ttcatttatcttttgtcttactata---tcaaattatatagtgtgattttagacttattatattgaacaatgtgtg 204  Q
    ||||||| ||||| ||||| ||| ||| ||| |||||||| ||||||||   |||||| | || |||||||| |||||||||||||||||||||||||||    
T  16655728 aatttaacgaatccctttatttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaatgtgtg 16655629  T
Q  205 ctgagaatatcaaatcagcatggaa 229  Q
    | || ||||||  ||||||||||||    
T  16655628 cagataatatcttatcagcatggaa 16655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 16985068 - 16984995
Alignment:
Q  151 actatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatgg 227  Q
    ||||||||||||||||| ||||||||||||||   |||||||||||||| ||||| |||||||||| ||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagac---ttatattgaacaatatgtgcagagaatatcatatcagcatgg 16984995  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 16785051 - 16784994
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 64  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  16785051 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 16784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 16794983 - 16794920
Alignment:
Q  13 gagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 76  Q
    |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||    
T  16794983 gagatgcaagagaggaaaaggtgaagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 16778955 - 16778898
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 64  Q
    |||| ||||||| |||||||||| || |||||||||||||||||||||||||||||||    
T  16778955 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 16985190 - 16985125
Alignment:
Q  43 gcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 108  Q
    |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | ||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaa 16985125  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 17067260 - 17067196
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaattta 71  Q
    |||| ||||||  |||| ||||| || ||||||||||||||| ||||||||||||||||||||||    
T  17067260 ggagaagagattgaagataggaaaaggtgaagattggcataaaatagctcacattcctgaattta 17067196  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 16558479 - 16558522
Alignment:
Q  23 agaggaatagctgaagattggcataagatagctcacattcctga 66  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  16558479 agaggaataggtgacgattggcataagatagctcacattcctga 16558522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 16784862 - 16784821
Alignment:
Q  188 atattgaacaatgtgtgctgagaatatcaaatcagcatggaa 229  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  16784862 atattaaacaatgtgtgcagagaatatcaaatcagcatggaa 16784821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 16841579 - 16841534
Alignment:
Q  35 gaagattggcataagatagctcacattcctgaatttaaattggaat 80  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||    
T  16841579 gaagattggcataagatagctcacattcctagattgaaattggaat 16841534  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 16975726 - 16975779
Alignment:
Q  34 tgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgt 87  Q
    |||||||||| |||||| ||||||  ||||| ||||||||||||||||||||||    
T  16975726 tgaagattggtataagacagctcatgttcctaaatttaaattggaatctgatgt 16975779  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 7055669 - 7055894
Alignment:
Q  15 gatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa---aat 111  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||| | ||| | |||||||||||||| |||| || ||||| |||||||   |||    
T  7055669 gatgcaagagaggagtaggtgaagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaat 7055768  T
Q  112 ttaatgaatctcttta-cttgttcatttatcttttgtcttactatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgaga 210  Q
    ||||| |||| |||||  || ||| ||| |||||| |||||||||||| |   ||||  | || || |||||   ||||||||||||||| |||| ||||    
T  7055769 ttaatcaatccctttatattattcctttctcttttttcttactatatcca---atatgctatggttctagac---ttatattgaacaatgggtgcagaga 7055862  T
Q  211 atatcaaatcagcatggaatacggggaagcaa 242  Q
    |||||| ||||||||| ||||| |||||||||    
T  7055863 atatcatatcagcatgcaatacagggaagcaa 7055894  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 38941733 - 38941802
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 76  Q
    |||| ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  38941733 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcctgaatttgaattg 38941802  T

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Target: scaffold0256 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 6938 - 6881
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 64  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6938 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 6279 - 6222
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 64  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6279 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 10627 - 10558
Alignment:
Q  7 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 76  Q
    |||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| || |||||    
T  10627 ggagaagagatgcaagagaggtataggtgaagattggcataagatagctcacattcctgaagttgaattg 10558  T

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Target: scaffold0133; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 15906 - 15855
Alignment:
Q  25 aggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 76  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||| |||||    
T  15906 aggaaaaggtgaagattggcataagatagctcacattcctcaatttcaattg 15855  T

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Target: scaffold0133; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 6120 - 6069
Alignment:
Q  160 aattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatat 214  Q
    |||||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  6120 aattatatggtgtgattttagacttat---attgaacaatgtgtgcagagaatat 6069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 13375853 - 13375738
Alignment:
Q  15 gatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatc------tgatgtaaaaccaacatttcgtggtaa 108  Q
    |||| |||||||||||||  ||||||||| |||||||||||||||| |||||| || ||||||||||      ||||| ||||||||||||| |||||||    
T  13375853 gatgcaagagaggaataggagaagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaa 13375754  T
Q  109 ---aatttaatgaatc 121  Q
       |||||||||||||    
T  13375753 tttaatttaatgaatc 13375738  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 20151627 - 20151580
Alignment:
Q  20 aagagaggaatagctgaagattggcataagatagctcacattcctgaa 67  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  20151627 aagagaggaataggtgaagattggcataagatagctaacattcctgaa 20151580  T

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