View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_low_13 (Length: 275)
Name: NF2910_low_13
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 7088792 - 7088542
Alignment:
| Q |
11 |
aagaagccagaagttgttgaatttggctcaacttgcactgattttgcaagagagccactgattttgaaaaacaaagcaccaagatggcatgaacaacttc |
110 |
Q |
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| T |
7088792 |
aagaagccagaagttgttgaatttggctcaacttacactgattttgcaagagagccactgattttgaaaaacaaagcaccaagatggcatgaacaactgc |
7088693 |
T |
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| Q |
111 |
aatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagcttgtagcagctgcagaacctagccaaaacgtttcggctgc |
210 |
Q |
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| T |
7088692 |
aatgttggtgtttgaatttcaagggacgggttacggtggcttcggtgaagaattttcagcttgtagcagctgcagaacctagccaaaacgtttcggctgc |
7088593 |
T |
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| Q |
211 |
agaacaagaaaaagttatactacaatttggaaaaattgggaaggacatatt |
261 |
Q |
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| T |
7088592 |
agaacaagaaaaagttatactacaatttggaaaaattgggaaggacatatt |
7088542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 39943079 - 39942985
Alignment:
| Q |
77 |
aaaaacaaagcaccaagatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagct |
171 |
Q |
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| T |
39943079 |
aaaaacaaggctcctaggtggcatgaacaactccaatgctggtgtttgaacttcaatggacgtgtgacagtcgcttcagttaaaaatttccagct |
39942985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 7878207 - 7878125
Alignment:
| Q |
92 |
agatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagcttgt |
174 |
Q |
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| T |
7878207 |
agatggcatgaacagctgcaatgctggtgcctaaatttcaagggccgcgttacagtggcttcagttaagaactttcaacttgt |
7878125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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