View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_low_15 (Length: 251)
Name: NF2910_low_15
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 11861229 - 11861447
Alignment:
| Q |
15 |
aatatcaatgaaggatacaatggattacactgctcctgaaatcaaaacttctaattcacaattgaaatccttctccaaattgaagtccatggtaattgag |
114 |
Q |
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| T |
11861229 |
aatatcaatgaaggatacaatgaagtacgctgctcctgaaatcaaaacttctaattcacaattgaaacccttctccaaattgaagtccatggtagttgag |
11861328 |
T |
|
| Q |
115 |
cgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattagagattgttttaatttaaagtctctgccacaaa |
214 |
Q |
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| T |
11861329 |
cgcatcgaccattctccaccagaaagatggctcaaaaacttcatttcacttgaggaacttcacattagagattgttttaatttagcgtctctaccacaag |
11861428 |
T |
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| Q |
215 |
gtttcaagttattgagttc |
233 |
Q |
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||||||||| |||||||| |
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| T |
11861429 |
gtttcaagtctttgagttc |
11861447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 11829171 - 11829312
Alignment:
| Q |
83 |
ccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattag |
182 |
Q |
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||||||| ||||||||||||||||||||||||||||| || || ||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
11829171 |
ccttctcgaaattgaagtccatggtaattgagcgcattgaccaatctccaccagagagttggcttaaaaacttcatttcacttgaggaacttcacattag |
11829270 |
T |
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| Q |
183 |
agattgttttaatttaaagtctctgccacaaagtttcaagtt |
224 |
Q |
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| T |
11829271 |
agattgttttattttggagtctctaccacaaggtttcaagtt |
11829312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 12040072 - 12040215
Alignment:
| Q |
63 |
ttctaattcacaattgaaatccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttca |
162 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||| || || || ||||| || | | |||||| ||||||||||||||| |
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| T |
12040072 |
ttctaattcacaatcacaacccttctccaaattgaagtccatggtaattgagcgtattgaccaatctccaccgaagagatggcttaaaaacttcatttca |
12040171 |
T |
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| Q |
163 |
cttgagaaacttcacattagagattgttttaatttaaagtctct |
206 |
Q |
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||| || ||||||||||| |||||||||| |||| |||||||| |
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| T |
12040172 |
cttaaggaacttcacattcgagattgtttccatttgaagtctct |
12040215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 11901221 - 11901071
Alignment:
| Q |
83 |
ccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattag |
182 |
Q |
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|||| ||||||||||| || |||||||||||||| || ||||| |||| ||||| | ||||| |||||||| |||| |||||| ||||||||||||| |
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| T |
11901221 |
ccttttccaaattgaaatcaatggtaattgagcgtattgagcaaactccaccagagaggtggcttaaaaactttgtttcgcttgaggaacttcacattag |
11901122 |
T |
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| Q |
183 |
agattgttttaatttaaagtctctgccacaaagtttcaagttattgagttc |
233 |
Q |
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||||||| ||| |||||||||| | |||||| ||||||||| |||||||| |
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| T |
11901121 |
agattgtgttattttaaagtctttaccacaaggtttcaagtctttgagttc |
11901071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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