View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_low_20 (Length: 236)
Name: NF2910_low_20
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 395931 - 396108
Alignment:
| Q |
56 |
aattaaatgaatgaatgaatgcagctaatcaagcactggcaacactggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcg |
155 |
Q |
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| T |
395931 |
aattaaatgaatgaatgaatgcagctaatcaagcactggcaacactagcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcg |
396030 |
T |
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| Q |
156 |
tcaagacagtgccgaggctgctaatactgtcagcttgtggactggaactgtttacatattttcactcttgggagcatt |
233 |
Q |
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| T |
396031 |
tcaagacagtgccgaggctgctaataatgtcagcttgtggactggaactgtttacatattttcactcttgggagcatt |
396108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 3804834 - 3804602
Alignment:
| Q |
17 |
tttgattcatcattatcattatatatacatggtaattgtaattaaatgaa----------------tgaatgaatgcagctaatcaagcactggcaacac |
100 |
Q |
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| T |
3804834 |
tttgactcatcattatcaatatatatacatggtaattgtaattaaatgaactaagtggaaattaaatgaacgaatgcagctaatcaagcattggcaacac |
3804735 |
T |
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| Q |
101 |
tggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgaggctgctaatactgtcagcttgtggactgg |
200 |
Q |
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| T |
3804734 |
tggcattctttggtgttggagtgaacttggttctgttcctaacaagagtccttcgtcaagacagtgccgaggctgctaacaatgtcagcaagtggactgg |
3804635 |
T |
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| Q |
201 |
aactgtttacatattttcactcttgggagcatt |
233 |
Q |
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| T |
3804634 |
aactgtttacattttttcactcttgggagcatt |
3804602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 395871 - 395921
Alignment:
| Q |
16 |
gtttgattcatcattatcattatatatacatggtaattgtaattaaatgaa |
66 |
Q |
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| T |
395871 |
gtttgattcatcattatcattatatatacatggtaattgtaattaaatgaa |
395921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 52811385 - 52811222
Alignment:
| Q |
73 |
aatgcagctaatcaagcactggcaacactggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgagg |
172 |
Q |
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| T |
52811385 |
aatgcagtgaatcaagcactggctactttagctttctttggagttggagtgaacttggttctgttcctaactagagttcttggtcaagacaatgccgaag |
52811286 |
T |
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| Q |
173 |
ctgctaatactgtcagcttgtggactggaactgtttacatattttcactcttgggagcatttct |
236 |
Q |
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| T |
52811285 |
ctgctaataatgtgagcaagtggacaggaaccgtttacatgttctcattggttggagcatttct |
52811222 |
T |
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