View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2910_low_3 (Length: 392)

Name: NF2910_low_3
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2910_low_3
NF2910_low_3
[»] chr4 (12 HSPs)
chr4 (88-377)||(22186210-22186500)
chr4 (1-90)||(44275809-44275898)
chr4 (1-89)||(49243918-49244006)
chr4 (1-87)||(35545015-35545102)
chr4 (4-89)||(21390955-21391040)
chr4 (1-92)||(6112733-6112824)
chr4 (1-90)||(7217868-7217958)
chr4 (1-90)||(28093094-28093184)
chr4 (1-89)||(3672377-3672466)
chr4 (1-75)||(52191214-52191288)
chr4 (7-90)||(45829256-45829339)
chr4 (38-89)||(46192499-46192551)
[»] chr7 (20 HSPs)
chr7 (1-92)||(34828168-34828259)
chr7 (1-90)||(28307493-28307583)
chr7 (1-89)||(36346564-36346653)
chr7 (1-91)||(31148393-31148483)
chr7 (1-90)||(42220962-42221051)
chr7 (1-90)||(26972201-26972291)
chr7 (1-90)||(45782658-45782748)
chr7 (1-90)||(29953570-29953660)
chr7 (1-90)||(34108529-34108619)
chr7 (7-91)||(5811161-5811245)
chr7 (7-90)||(13108256-13108339)
chr7 (1-89)||(7699882-7699971)
chr7 (1-89)||(7700080-7700169)
chr7 (1-89)||(7700278-7700367)
chr7 (1-89)||(7700476-7700565)
chr7 (1-87)||(30887803-30887890)
chr7 (7-93)||(46475133-46475220)
chr7 (3-87)||(15020384-15020468)
chr7 (14-91)||(42950034-42950111)
chr7 (9-87)||(21807324-21807402)
[»] chr3 (15 HSPs)
chr3 (1-92)||(29472912-29473003)
chr3 (1-90)||(30735494-30735584)
chr3 (1-91)||(51339781-51339871)
chr3 (1-89)||(21559664-21559753)
chr3 (1-90)||(34749896-34749986)
chr3 (1-90)||(48200788-48200878)
chr3 (1-89)||(46111943-46112032)
chr3 (14-92)||(39467098-39467176)
chr3 (9-89)||(38231403-38231484)
chr3 (1-92)||(44000092-44000184)
chr3 (1-87)||(36749509-36749596)
chr3 (44-90)||(50966265-50966311)
chr3 (44-90)||(51069400-51069446)
chr3 (1-89)||(36370337-36370426)
chr3 (1-88)||(22894783-22894870)
[»] chr2 (10 HSPs)
chr2 (2-90)||(33732673-33732761)
chr2 (2-91)||(16089925-16090014)
chr2 (1-91)||(44958216-44958307)
chr2 (1-92)||(37498859-37498951)
chr2 (7-86)||(3830900-3830979)
chr2 (1-67)||(14573098-14573165)
chr2 (7-91)||(6376236-6376320)
chr2 (7-93)||(36315670-36315757)
chr2 (1-89)||(41188872-41188961)
chr2 (38-89)||(37914236-37914288)
[»] chr5 (13 HSPs)
chr5 (1-90)||(31800661-31800750)
chr5 (2-90)||(42683703-42683792)
chr5 (2-90)||(40887940-40888029)
chr5 (1-89)||(39371030-39371119)
chr5 (1-89)||(2237379-2237468)
chr5 (1-89)||(13347231-13347320)
chr5 (7-76)||(27553386-27553455)
chr5 (1-67)||(9408060-9408127)
chr5 (1-89)||(1815619-1815704)
chr5 (2-76)||(4300556-4300630)
chr5 (1-90)||(14831647-14831737)
chr5 (1-61)||(41003879-41003938)
chr5 (9-89)||(19596067-19596148)
[»] chr8 (10 HSPs)
chr8 (1-91)||(36189319-36189408)
chr8 (1-90)||(18184656-18184745)
chr8 (1-91)||(12665448-12665539)
chr8 (1-91)||(30432442-30432532)
chr8 (2-89)||(10203768-10203856)
chr8 (1-91)||(43186130-43186220)
chr8 (1-91)||(31318908-31318999)
chr8 (1-89)||(42162701-42162790)
chr8 (7-89)||(33726121-33726203)
chr8 (1-77)||(44081883-44081960)
[»] chr1 (9 HSPs)
chr1 (1-90)||(34307136-34307226)
chr1 (2-90)||(2509128-2509217)
chr1 (2-87)||(39249864-39249950)
chr1 (1-90)||(46901733-46901823)
chr1 (2-87)||(19258674-19258759)
chr1 (2-90)||(28647457-28647545)
chr1 (183-248)||(30575141-30575206)
chr1 (195-247)||(30574970-30575022)
chr1 (1-89)||(9642866-9642953)
[»] chr6 (6 HSPs)
chr6 (1-90)||(13697671-13697760)
chr6 (6-90)||(3118045-3118130)
chr6 (7-90)||(24208553-24208636)
chr6 (7-88)||(14023043-14023124)
chr6 (4-92)||(3986902-3986990)
chr6 (1-93)||(15345655-15345747)
[»] scaffold0043 (1 HSPs)
scaffold0043 (12-91)||(87160-87239)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-89)||(6821-6910)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 88 - 377
Target Start/End: Original strand, 22186210 - 22186500
Alignment:
Q  88 cctatagaccgcactaaaatgtatc-aaaagaggccactgcacagaaggctatcggctccagcagagtacatgttccaccaccactcatagtaacatggg 186  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22186210 cctatagaccgcactaaaatgtatccaaaagaggccactgcacagaaggctatcggctccagcagagtacatgttccaccaccactcatagtaacatggt 22186309  T
Q  187 ttcctcgtgtgaaaatacttaattactgttttaaccgaaagagcttcttcctaaataatagttgcagctagtgttactttctatatttgaggtgatttag 286  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22186310 ttcctcgtttgaaaatacttaattactgttttaaccgaaagagcttcttcctaaataatagttgcagctagtgttactttctacatttgaggtgatttag 22186409  T
Q  287 taaattggtatgaagatttgattaggagattaactaacataaatgattgtaagccaaccatatattaaatgtatggttcctgctctaatct 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  22186410 taaattggtatgaagatttgattaggagattaactaacataaatgattgtaagcgaaccatatattaaatgtatggttcctactctaatct 22186500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 44275809 - 44275898
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  44275809 atgatatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctatctatctttttcct 44275898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 49243918 - 49244006
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||||||||| |||||| | |||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  49243918 atgatatgatgtaaaattactaaaatacccctaatacatggagtgtacataagaggtgtatgaaaaaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 35545015 - 35545102
Alignment:
Q  1 atgatatgatgtaaaattactaaaa-tatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatcttttt 87  Q
    ||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  35545015 atgatatgatgtaaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 21391040 - 21390955
Alignment:
Q  4 atatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||  ||||||||||||||| ||||||| |||||||||||    
T  21391040 atatgatgtaaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaagggtgtctacctatctttttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 6112733 - 6112824
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    ||||||||||||||||||||| ||||| |||||| | |||| |||||||||||  |||||||||||||  ||||||| ||||||||||||||    
T  6112733 atgatatgatgtaaaattactcaaatacccctaatacatggagtgtacataagaagtgtatgaaaaagagtgtctacctatctttttcctat 6112824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 7217868 - 7217958
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||| |  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||| ||||||||||||    
T  7217868 atgatatgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgtttacctatctttttcct 7217958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28093184 - 28093094
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||||||| |||| ||||| |||||| | |||||| ||||||||||  |||||||||||||||||||||| ||||||||||||    
T  28093184 atgatatgatgtaaaaatactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtctacctatctttttcct 28093094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3672377 - 3672466
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||| ||||||| ||||| |||||| | ||| |||||||||||||  |||||||||||||| | ||||| |||||||||||    
T  3672377 atgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtatctacctatctttttcc 3672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 52191288 - 52191214
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtct 75  Q
    ||||| |||||  ||||||||||||||  ||||||||||||||||||||  || ||||||| ||||||| |||||    
T  52191288 atgatgtgatgcgaaattactaaaatactcctaacatatggggtgtacacgagaggtgtataaaaaagggtgtct 52191214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 45829339 - 45829256
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtat-gaaaaaggatgtctacttatctttttcct 90  Q
    |||||| |||| | ||||||| ||||  ||||||||||||||||||  |||||||  ||||||| ||||||| ||||||||||||    
T  45829339 tgatgtgaaatgattaaaatacccctggcatatggggtgtacataa-aggtgtatcaaaaaagggtgtctacctatctttttcct 45829256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 46192499 - 46192551
Alignment:
Q  38 atggggtgtacataagtggtgtat-gaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||||||||| |||||||  ||||||| ||||||| |||||||||||    
T  46192499 atggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 46192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34828168 - 34828259
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  34828168 atgatatgatgtaaaattactaaaatacccctaacatatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcctat 34828259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28307583 - 28307493
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  28307583 atgatatgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtctacctatctttttcct 28307493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36346653 - 36346564
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  36346653 atgatatgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 36346564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31148393 - 31148483
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||||||||||||||||||||||||  |||||||||||||||||  ||||| ||||||||||||||  ||||||| |||||||||||||    
T  31148393 atgatatgatgtaaaattactaaaataagcctaacatatggggtgtgtataagaggtgtatgaaaaagagtgtctacctatctttttccta 31148483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42221051 - 42220962
Alignment:
Q  1 atgatatgatgtaaaattactaaaa-tatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||| |||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  42221051 atgatatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagg-tgtctacctatctttttcct 42220962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26972291 - 26972201
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||| ||||| |||||| | |||||| ||||||||||  |||||||||||||| ||||||| ||||||||||||    
T  26972291 atgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcct 26972201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45782748 - 45782658
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggg-gtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||   |||||| ||||||| ||||||| ||||||||||||    
T  45782748 atgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtctacctatctttttcct 45782658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29953660 - 29953570
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgg-ggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||| |||||||||||| | ||||  || ||||||||  |||||||||||||| ||||||| ||||||||||||    
T  29953660 atgatatgatgtaaaattactcaaatatccctaatacatggaagtctacataagaagtgtatgaaaaagggtgtctacctatctttttcct 29953570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34108529 - 34108619
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggg-gtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||| ||||| |||||| | ||||| |||||||||||  |||||||||||||| ||| ||| ||||||||||||    
T  34108529 atgatatgatgtaaaattactcaaatacccctaatacatgggagtgtacataagaagtgtatgaaaaagggtgtttacctatctttttcct 34108619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 5811245 - 5811161
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||| |||||||||||||| |||||||| ||| |||||||||  | ||||||| ||||||| ||||||| |||||||||||||    
T  5811245 tgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttccta 5811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 13108256 - 13108339
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||| |||||||||||||| |||||||| ||| ||||||||| |  ||||||| ||||||| ||||||| ||||||||||||    
T  13108256 tgatgtgaaattactaaaatacccctaacacatgaggtgtacatgaaaggtgtataaaaaagggtgtctacctatctttttcct 13108339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7699971 - 7699882
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgg-ggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||| |||||||||||||||| || ||||| |||  |||||| ||||| ||||||||||||||| ||| ||| |||||||||||    
T  7699971 atgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7700169 - 7700080
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgg-ggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||| |||||||||||||||| || ||||| |||  |||||| ||||| ||||||||||||||| ||| ||| |||||||||||    
T  7700169 atgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7700367 - 7700278
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgg-ggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||| |||||||||||||||| || ||||| |||  |||||| ||||| ||||||||||||||| ||| ||| |||||||||||    
T  7700367 atgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7700565 - 7700476
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgg-ggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||| |||||||||||||||| || ||||| |||  |||||| ||||| ||||||||||||||| ||| ||| |||||||||||    
T  7700565 atgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30887803 - 30887890
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtc-tacttatcttttt 87  Q
    ||||||||||||||||||||| ||||| | |||| | |||||||||| |||||  |||||||||||||| |||| ||| |||||||||    
T  30887803 atgatatgatgtaaaattacttaaatacctctaatacatggggtgtatataagaagtgtatgaaaaagggtgtcttacgtatcttttt 30887890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 46475133 - 46475220
Alignment:
Q  7 tgatgtaaaattactaaaatatccc-taacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctata 93  Q
    |||||| |||||||||||||| ||| ||||| ||| | ||||||| || ||||||| ||||||| ||||||| |||||||||||||||    
T  46475133 tgatgtgaaattactaaaataccccataacacatgagatgtacatgagaggtgtataaaaaagggtgtctacctatctttttcctata 46475220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 15020384 - 15020468
Alignment:
Q  3 gatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatcttttt 87  Q
    |||||||||| ||||||||||||||||||||||| ||| | |||| ||  | ||||||| |||| | ||||||| ||||||||||    
T  15020384 gatatgatgtgaaattactaaaatatccctaacacatgagatgtatatgggaggtgtataaaaatgaatgtctatttatcttttt 15020468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 42950111 - 42950034
Alignment:
Q  14 aaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||||||||||| |||| | | |||||||||||||    ||||||| ||||||| ||||||| |||||||||||||    
T  42950111 aaattactaaaatacccctgaaacatggggtgtacatgctaggtgtataaaaaagggtgtctacctatctttttccta 42950034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 21807402 - 21807324
Alignment:
Q  9 atgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatcttttt 87  Q
    |||| |||||||||||||| ||||||||  ||||||||| || ||  |||||| ||||||| |||| || |||||||||    
T  21807402 atgtgaaattactaaaatacccctaacacgtggggtgtatatgagaagtgtataaaaaaggttgtcaacctatcttttt 21807324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 29472912 - 29473003
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  29472912 atgatatgatgtaaaattactaaaatacccctaacacatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcctat 29473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30735584 - 30735494
Alignment:
Q  1 atgatatgatgtaaaattactaaaa-tatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||| |||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  30735584 atgatatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatctttttcct 30735494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 51339871 - 51339781
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    ||||||||||||||||||||||||||| | |||||| |||  ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  51339871 atgatatgatgtaaaattactaaaatacctctaacacatgatgtgtacataagaggtgtatgaaaaagggtgtctacctatctttttccta 51339781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21559664 - 21559753
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatat-ggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||| | ||||||  |||||||||||    
T  21559664 atgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtctatctatctttttcc 21559753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34749986 - 34749896
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatat-ggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||| ||||| |||||| | || ||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  34749986 atgatatgatgtaaaattactcaaatacccctaatacataggggtgtacataagaagtgtatgaaaaaggatgtctggctatctttttcct 34749896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 48200788 - 48200878
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||| ||||| || ||| | |||||| |||||||||   |||||||||||||||||||||| ||||||||||||    
T  48200788 atgatatgatgtaaaattactcaaatacccataatacatgggggtgtacataaaaagtgtatgaaaaaggatgtctacctatctttttcct 48200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 46112032 - 46111943
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||||||||| |||||| | |||||| |||| ||||  ||||||||||||| | ||||||| |||||||||||    
T  46112032 atgatatgatgtaaaattactaaaatacccctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtctacctatctttttcc 46111943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 39467176 - 39467098
Alignment:
Q  14 aaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    ||||||||||||||||| ||||| ||| |||||||||  | ||||||| ||||||| ||| ||| ||||||||||||||    
T  39467176 aaattactaaaatatccataacacatgaggtgtacatgggaggtgtataaaaaagggtgtgtacctatctttttcctat 39467098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 38231403 - 38231484
Alignment:
Q  9 atgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtat-gaaaaaggatgtctacttatctttttcc 89  Q
    |||| |||| |||||| || |||| ||| |||||||||||||||| |||||||  ||||||||||||||| |||||||||||    
T  38231403 atgtgaaatgactaaactacccctgacacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44000092 - 44000184
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    ||||||||||||||||||||| ||||| | |||| | ||| ||| ||||||||   |||||||||||||  ||||||| ||||||||||||||    
T  44000092 atgatatgatgtaaaattactcaaatacctctaatacatgagggcgtacataaaaagtgtatgaaaaagagtgtctacctatctttttcctat 44000184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36749509 - 36749596
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatcttttt 87  Q
    ||||||||||||||||||||| ||||| | |||| | ||| ||||||||||||   |||||||||||||  ||||||| |||||||||    
T  36749509 atgatatgatgtaaaattactcaaatacctctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtctacctatcttttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 50966265 - 50966311
Alignment:
Q  44 tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  50966265 tgtacataagaggtgtatgaaaaagaatgtctacctatctttttcct 50966311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 51069400 - 51069446
Alignment:
Q  44 tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  51069400 tgtacataagaggtgtatgaaaaagaatgtctacctatctttttcct 51069446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36370426 - 36370337
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||| ||||| |||||| | ||| ||||||| ||||   |||||||||||||  | ||||| |||||||||||    
T  36370426 atgatatgatgtaaaattactcaaatacccctaatacatgagggtgtatataaaaagtgtatgaaaaagagtatctacctatctttttcc 36370337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22894783 - 22894870
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttc 88  Q
    ||||||||||||| ||||||| ||||| |||||| | ||| |||||||||||||  ||||||| |||||| ||||||  ||||||||||    
T  22894783 atgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatg-aaaagggtgtctatctatctttttc 22894870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 33732673 - 33732761
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  33732673 tgatatgatgtaaaattactaaaatacccctaatatatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcct 33732761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16089925 - 16090014
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| | ||||||| |||||||||||||    
T  16089925 tgatatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttccta 16090014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44958216 - 44958307
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  44958216 atgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtctacctatctttttccta 44958307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 37498951 - 37498859
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||| ||||||| ||||||| ||||||||||||||    
T  37498951 atgatatgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtctacctatctttttcctat 37498859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 3830979 - 3830900
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttt 86  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  3830979 tgatgtaaaattactaatatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14573098 - 14573165
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatat-ggggtgtacataagtggtgtatgaaaaa 67  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||    
T  14573098 atgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgtaaaa 14573165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 6376320 - 6376236
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||| |||||||||||||| | |||||| ||| | |||||||  | ||||||| ||||||||||||||| |||||||||||||    
T  6376320 tgatgtgaaattactaaaatacctctaacacatgagatgtacatgggaggtgtataaaaaaggatgtctacctatctttttccta 6376236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 36315670 - 36315757
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaa-aggatgtctacttatctttttcctata 93  Q
    |||||| |||| | ||||||| |||| ||| ||| |||||||||||| ||||||| |||| ||||||||||| |||||||||||||||    
T  36315670 tgatgtgaaatgattaaaatacccctgacacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcctata 36315757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41188872 - 41188961
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatga-aaaaggatgtctacttatctttttcc 89  Q
    ||||| ||||||||||||||||||||||| || ||| ||| | ||||||| || ||||||| | |||||| ||||| | |||||||||||    
T  41188872 atgatgtgatgtaaaattactaaaatatctctgacacatgtgatgtacatgagaggtgtataacaaaagggtgtctgcctatctttttcc 41188961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 37914288 - 37914236
Alignment:
Q  38 atggggtgtacataagtggtgtat-gaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||||||||| |||||||  ||||||| ||||||| |||||||||||    
T  37914288 atggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 37914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31800661 - 31800750
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| | ||||||||||||    
T  31800661 atgatatgatgtaaaattactaaaatacccctaacatatggggtgtacacaagaggtgtatgaaaaagggtgtctgcctatctttttcct 31800750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 42683703 - 42683792
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||    
T  42683703 tgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtctatctatctttttcct 42683792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 40888029 - 40887940
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||||||||||||||||| | |||| | |||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  40888029 tgatatgatgtaaaattactaaaatacctctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcct 40887940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39371030 - 39371119
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||| ||||| |||||| | |||||| ||||||||||  |||||||||||||| ||||||| |||||||||||    
T  39371030 atgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 39371119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2237379 - 2237468
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||| ||||| |||||| |  ||||| ||||||||||  |||||||||||||| ||||||| |||||||||||    
T  2237379 atgatatgatgtaaaattactcaaatacccctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 2237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13347231 - 13347320
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||| ||||||| ||||| |||||| | ||| |||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  13347231 atgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 27553455 - 27553386
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtcta 76  Q
    |||||||||||||||||||||  ||||||| || ||||||||||||| ||||||||||||||| ||||||    
T  27553455 tgatgtaaaattactaaaatactcctaacacatagggtgtacataagaggtgtatgaaaaagggtgtcta 27553386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9408127 - 9408060
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatat-ggggtgtacataagtggtgtatgaaaaa 67  Q
    ||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||  ||||||||||||    
T  9408127 atgatatgatgtaaaattactcaaatacccctaatatatgggggtgtacataagaagtgtatgaaaaa 9408060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1815704 - 1815619
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||   |  | ||||||||| | ||||||| |||||||||||    
T  1815704 atgatatgatgtaaaattactaaaatacccctaacacatagggtgtacat---ttctttatgaaaaaaggtgtctacctatctttttcc 1815619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 4300630 - 4300556
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtcta 76  Q
    |||| |||||| |||||| |||||||||||||||| ||| ||||||||| || | ||||| ||||||||||||||    
T  4300630 tgatgtgatgtgaaattattaaaatatccctaacacatgaggtgtacatgagagatgtataaaaaaggatgtcta 4300556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14831647 - 14831737
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatat-ggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||| | ||||| |||||| |  | ||||||||||||||  |||||||||||||| ||| ||| ||||||||||||    
T  14831647 atgatatgatgtaaaattattcaaatacccctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgtttacctatctttttcct 14831737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41003938 - 41003879
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtat 61  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||| || |||||||    
T  41003938 atgatgtgatgtaaaattactaaa-tatccctgacatatggggtgtacatgagaggtgtat 41003879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 19596148 - 19596067
Alignment:
Q  9 atgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaa-ggatgtctacttatctttttcc 89  Q
    |||| |||| |||||| || |||| ||| |||||||||||||||| ||| | | ||||| |||||||||| |||||||||||    
T  19596148 atgtgaaatgactaaactacccctgacacatggggtgtacataagaggtatttcaaaaaaggatgtctacctatctttttcc 19596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 36189319 - 36189408
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  36189319 atgatatgatataaaattattaaaatacccctaacatatggg-tgtacataagtggtgtatgaaaaagggtgtctacctatctttttccta 36189408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18184656 - 18184745
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||| |||||||||||||||| |||||||| ||| |||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  18184656 atgatatgatataaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaaggatgtctacctatctttttcct 18184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 12665448 - 12665539
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| |||||| |||||||||||||||| |||||||||||||    
T  12665448 atgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtctacctatctttttccta 12665539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30432442 - 30432532
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    ||||||||||||||||||||||||||| || ||| ||||||| |||||||||| ||||||||||||||| ||||||   ||||||||||||    
T  30432442 atgatatgatgtaaaattactaaaatacccataatatatgggatgtacataagaggtgtatgaaaaagggtgtctatcaatctttttccta 30432532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 10203768 - 10203856
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||    
T  10203768 tgatatgatataaaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtctacctatctttttcc 10203856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43186130 - 43186220
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||||||| |||||||||| ||||  |||||| | || |||||||||||||  |||||||||||| ||||||||| |||||||||||||    
T  43186130 atgatatgatataaaattactcaaatgcccctaatacatagggtgtacataagaagtgtatgaaaaatgatgtctacctatctttttccta 43186220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31318908 - 31318999
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    ||||||||||||||||||||| |||||  ||||| | |||||| |||| |||||  |||||||||||| ||||||||| |||||||||||||    
T  31318908 atgatatgatgtaaaattactcaaatactcctaatacatgggggtgtatataagaagtgtatgaaaaatgatgtctacctatctttttccta 31318999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42162701 - 42162790
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatat-ggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||| ||||| |||||| | || |||||||||||||   |||||||||||||  ||||||| |||||||||||    
T  42162701 atgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtctacctatctttttcc 42162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 33726121 - 33726203
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||| |||||||||||||| |||||||| |||  ||||||||  | ||||||| ||||||| ||||||| |||||||||||    
T  33726121 tgatgtgaaattactaaaatacccctaacacatgaagtgtacatgggaggtgtataaaaaagggtgtctacctatctttttcc 33726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44081883 - 44081960
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctac 77  Q
    ||||||| ||||||||||||| ||||| |||||| | |||||| ||||||||||  |||||||||||||| |||||||    
T  44081883 atgatataatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctac 44081960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34307226 - 34307136
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggg-gtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  34307226 atgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcct 34307136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 2509128 - 2509217
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||   ||||||| ||||||||||||    
T  2509128 tgatatgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtctacctatctttttcct 2509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 39249950 - 39249864
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatgggg-tgtacataagtggtgtatgaaaaaggatgtctacttatcttttt 87  Q
    |||||| ||||||||||||||||||| |||||| | |||||| |||||||||| ||||||||||||| | ||||||| |||||||||    
T  39249950 tgatataatgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46901823 - 46901733
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatgg-ggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    ||||||||||||||||||||| |||||  ||| | | |||| ||||||||||||   ||||||||||||||||||||| ||||||||||||    
T  46901823 atgatatgatgtaaaattactcaaatactcctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtctacctatctttttcct 46901733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 19258759 - 19258674
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatcttttt 87  Q
    |||| |||||| |||||| |||||||| ||||||| ||||||||||||| || | ||||| ||||||| ||||||| |||||||||    
T  19258759 tgatgtgatgtgaaattattaaaatattcctaacacatggggtgtacatgagagatgtataaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 28647457 - 28647545
Alignment:
Q  2 tgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||| |||||| |||||| |||||||| ||||||| ||||| ||||||| || | ||||| ||||||| ||||||| ||||||||||||    
T  28647457 tgatgtgatgtgaaattattaaaatattcctaacacatgggatgtacatgagagatgtataaaaaagggtgtctacctatctttttcct 28647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 30575206 - 30575141
Alignment:
Q  183 tgggttcctcgtgtgaaaatacttaattactgttttaaccgaaagagcttcttcctaaataatagt 248  Q
    ||||||||||  |||||||| ||||||| ||||||||||| ||  || ||||||||||||||||||    
T  30575206 tgggttcctcaagtgaaaattcttaattcctgttttaaccaaactaggttcttcctaaataatagt 30575141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 30575022 - 30574970
Alignment:
Q  195 gtgaaaatacttaattactgttttaaccgaaagagcttcttcctaaataatag 247  Q
    |||||||| |||| || ||||||||||| ||| ||||||||||||||||||||    
T  30575022 gtgaaaatgcttacttcctgttttaaccaaaacagcttcttcctaaataatag 30574970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9642953 - 9642866
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    |||||||||||| |||||||||||| |||||| ||| |||  |||| |||||  | ||||| |||||  |||||||| |||||||||||    
T  9642953 atgatatgatgtgaaattactaaaacatccct-acacatgaagtgtgcataatagatgtataaaaaaaaatgtctacctatctttttcc 9642866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13697671 - 13697760
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||  ||||||||||| ||| ||||| ||||||||||||    
T  13697671 atgatatgatataaaattactaaaatatctctaacacatggggtgtacataagtaatgtatgaaaaatgatctctacctatctttttcct 13697760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 3118130 - 3118045
Alignment:
Q  6 atgatgtaaaattactaaaatatccctaacatatggg-gtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||||||||||||||||||| |||||| | ||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  3118130 atgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtctacctatctttttcct 3118045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 24208553 - 24208636
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcct 90  Q
    |||||| |||||||||||||| |||||||| ||| |||||| || || ||||||| ||||||||||||||| ||||||||||||    
T  24208553 tgatgtgaaattactaaaatacccctaacacatgaggtgtaaatgagaggtgtataaaaaaggatgtctacctatctttttcct 24208636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 14023043 - 14023124
Alignment:
Q  7 tgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttc 88  Q
    |||||| |||||||||||||| |||||||| ||| |||||||||  | ||||||| ||||||| ||||||| ||||||||||    
T  14023043 tgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttc 14023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 3986990 - 3986902
Alignment:
Q  4 atatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctat 92  Q
    |||||||||||||||||| ||||| || ||| | ||||||| |||||||    ||||||||||| ||||||||| ||||||||||||||    
T  3986990 atatgatgtaaaattactcaaatacccttaatacatggggtatacataataaatgtatgaaaaatgatgtctacctatctttttcctat 3986902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15345747 - 15345655
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcctata 93  Q
    |||||||||| | |||||||| ||||  |||||| | || |||||||||||||  |||||||||||| ||||||||| ||| |||||||||||    
T  15345747 atgatatgatatcaaattactcaaatgcccctaatacatagggtgtacataagaagtgtatgaaaaaagatgtctacctatttttttcctata 15345655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 87239 - 87160
Alignment:
Q  12 taaaattactaaaatatccctaacatatggggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttccta 91  Q
    |||||||||||||||| |||||||| |||||||||||||||  ||||||||||||| | ||||||| |||||||||||||    
T  87239 taaaattactaaaatacccctaacacatggggtgtacataaaaggtgtatgaaaaaaggtgtctacctatctttttccta 87160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6821 - 6910
Alignment:
Q  1 atgatatgatgtaaaattactaaaatatccctaacatatg-gggtgtacataagtggtgtatgaaaaaggatgtctacttatctttttcc 89  Q
    ||||||||||||||||||||| |||||||||||| | ||| |||||||||||||  |||||||||||| | | ||||| |||||||||||    
T  6821 atgatatgatgtaaaattacttaaatatccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatctacctatctttttcc 6910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University