View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2910_low_9 (Length: 302)
Name: NF2910_low_9
Description: NF2910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2910_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 27 - 302
Target Start/End: Original strand, 47259003 - 47259277
Alignment:
| Q |
27 |
tctgtttgttagttattctgtttttggaaatgtcatttatgtgaagaatattgagagtacaacagactaattatgtctagttactgatgcaggaagttta |
126 |
Q |
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| T |
47259003 |
tctgtttgttagttattctgtttttggaaatgtcatttatgggaagaatatttt-agtacaacagactaattatgtctagttactgatgcaggaagttta |
47259101 |
T |
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| Q |
127 |
acgaaatcgcctgtgcgaaaaacgatgtgagcttgattttttcattatttatctgtttgacatttcaaaagcgttgttaagtgttctaattgttgtttat |
226 |
Q |
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| T |
47259102 |
acgaaatcgcctgtgcgaaaaacgatgtgagcttgattttttcattatttatctgtttgacatttcaaaagcgttgttaagtgttctaattgttgtttat |
47259201 |
T |
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| Q |
227 |
ttggtttgtgtttcttcaggattcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattg |
302 |
Q |
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| T |
47259202 |
ttggtttgtgtttcttcaggattcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattg |
47259277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 47266812 - 47266873
Alignment:
| Q |
241 |
ttcaggattcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattg |
302 |
Q |
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| T |
47266812 |
ttcaggcttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattg |
47266873 |
T |
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