View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-1-Insertion-1 (Length: 1101)
Name: NF2911-1-Insertion-1
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-1-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 379 - 816
Target Start/End: Original strand, 7235546 - 7235982
Alignment:
| Q |
379 |
gtgaagtatgagagagggatagtatagtgtgtgtattgaagtgaggattctatggtacttcttgatccaatggtttcagatttatccatgtcagcattct |
478 |
Q |
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| T |
7235546 |
gtgaagtatgagagagggatagtatagtgtgtgtattgaagtgaggattctatggtacttcttgatccaatggtttcagatttatccatgtcagcattct |
7235645 |
T |
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| Q |
479 |
ctatagagtgttatcattataatttcacaatttattcacctttctaactttctttttaaccnnnnnnnngttaatcttggtagttagttagtacaaatgc |
578 |
Q |
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| T |
7235646 |
ctatagagtgttatcattataatttcacaatttattcacctttttaactttctttttaaccttttttttgttaatcttggtagttagttagtacaaatgc |
7235745 |
T |
|
| Q |
579 |
acacacactcttcaactcaaaggttccactctttcacctctattcctctaaactttgtatcacaaatgatgtgcttctttcaattttttattcagttgtt |
678 |
Q |
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| T |
7235746 |
acacacactcttcaactcaaaggttccactctt---cctttattcctctaaactttgtatcacaaatgatgtgtttctttcaattttttattcagttgtt |
7235842 |
T |
|
| Q |
679 |
agttaaaaacag--nnnnnnnnnnaagtgggtccacttgttttagttgtcccatttactttctttttcatgaagtaacaacaacactctcatccattttc |
776 |
Q |
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| T |
7235843 |
agttaaaaacagttttttttttttaagtgggtccacttgttttagttgtcccatttactttctttttcatgaagtaacaacaacactctgatccattttc |
7235942 |
T |
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| Q |
777 |
ttcttattccaacaaactttaagtgggtattttattgagg |
816 |
Q |
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| T |
7235943 |
ttcttattccaacaaactttaagtgggtattttattgagg |
7235982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 7235178 - 7235378
Alignment:
| Q |
8 |
atatcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagttaataagaaggtgtgaaaattgatgtaataaaggaagaaaaaagaagg |
107 |
Q |
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| T |
7235178 |
atatcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagt---taagaaagtgtgaaaattgatgtaataaaggaagaaaaaagaagg |
7235274 |
T |
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| Q |
108 |
tgtagtgatta--gtgtatagcatttggaagatgaattttgttgaagaagnnnnnnnnngaatgaaactttgaagtagttgaagcgatttttacctttga |
205 |
Q |
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| T |
7235275 |
tgtagtgagtagtgtgtatagcatttggaagatgaattttgatgaagaag-aaaaaaaagaatgaaactttgaagtagttgaagcgatttttacctttga |
7235373 |
T |
|
| Q |
206 |
agtga |
210 |
Q |
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||||| |
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| T |
7235374 |
agtga |
7235378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 7235435 - 7235490
Alignment:
| Q |
268 |
taagagtagtgtttgtttgattctatttatttatatttggaagaaaaatccatgca |
323 |
Q |
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| T |
7235435 |
taagagtagtttttgtttgattctatttatttatatttggaagaaaaatccatgca |
7235490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 45228980 - 45228892
Alignment:
| Q |
11 |
tcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagttaataagaaggtgtgaaaattgatgtaataaaggaagaaaaaa |
102 |
Q |
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| T |
45228980 |
tcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagt---taagaaagtgtgaaaattgatgtggtaaaggaagaaaaaa |
45228892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 30641459 - 30641373
Alignment:
| Q |
13 |
ttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagttaataagaaggtgtgaaaattgatgtaataaaggaagaaaaaa |
102 |
Q |
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| T |
30641459 |
ttgcaaaactcatatctgaaatgagataaaaattcaaactttgaagt---taagaaaatgtgaaaattgatgtgataaaggaagaaaaaa |
30641373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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