View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-1-Insertion-16 (Length: 263)

Name: NF2911-1-Insertion-16
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-1-Insertion-16
NF2911-1-Insertion-16
[»] chr4 (3 HSPs)
chr4 (8-263)||(9943994-9944249)
chr4 (9-65)||(19695118-19695174)
chr4 (9-65)||(19705703-19705759)
[»] chr8 (2 HSPs)
chr8 (9-260)||(29921678-29921925)
chr8 (8-65)||(3343453-3343510)
[»] scaffold1171 (1 HSPs)
scaffold1171 (9-65)||(184-240)
[»] chr1 (1 HSPs)
chr1 (9-65)||(20590416-20590472)
[»] scaffold0250 (1 HSPs)
scaffold0250 (8-65)||(25244-25301)
[»] chr2 (1 HSPs)
chr2 (8-65)||(17099120-17099177)
[»] chr3 (3 HSPs)
chr3 (9-65)||(14767073-14767129)
chr3 (166-260)||(11332835-11332929)
chr3 (9-65)||(11332679-11332735)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 9944249 - 9943994
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttaca 107  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  9944249 aatatttctcatctattccaccatgaatcagttccgaagccttattcttagccctacaaagcttaaagtgactcaacataactccccacttatttttaca 9944150  T
Q  108 agttgattgcaattccttaagtttcataccagatgagggtttcagaattggtatcagtttctcagccaacaaagcagtcttaatcaaccaaattttttca 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||    
T  9944149 agttgattgcaattccttaagtttcataccagatgagtgtttcagaattggtaccagtttcttagccaacaaagcagtcttaatcaacctaatttttcca 9944050  T
Q  208 gtgttatgacatttatggtcagggttattcctagcaagaacaaagtaagtttttgg 263  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9944049 gtgttataacatttatggtcagggttattcctaacaagaacaaagtatgtttttgg 9943994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 19695174 - 19695118
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||| ||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  19695174 atattgttcatctatggcaccatggataagttctaaagccttcttcttagccctata 19695118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 19705759 - 19705703
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||| ||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  19705759 atattgttcatctatggcaccatggataagttctaaagccttcttcttagccctata 19705703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 29921678 - 29921925
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttacaa 108  Q
    |||||||||||||||| ||||||| || ||||  |||||||| |||||||||||||| |||| |  |   |||||||| ||||||||||||| |||||||    
T  29921678 atattgctcatctattgcaccatggataagttttaaagccttcttcttagccctatatatctgatagcttctcaacatcactccccacttatctttacaa 29921777  T
Q  109 gttgattgcaattccttaagtttcataccagatgagggtttcagaattggtatcagtttctcagccaacaaagcagtcttaatcaaccaaattttttcag 208  Q
    | || ||||||| ||||||||||||||  |  || | ||||||  ||||||| ||    || || || ||||| ||| |||||||| |  | |||| |||    
T  29921778 gatgcttgcaatcccttaagtttcatatgaagtgtgtgtttcattattggtacca---acttagacaccaaagaagttttaatcaatctga-ttttccag 29921873  T
Q  209 tgttatgacatttatggtcagggttattcctagcaagaacaaagtaagtttt 260  Q
    |||| ||||| ||||| ||||||||||  ||||||||||||||||| |||||    
T  29921874 tgttgtgacacttatgatcagggttatatctagcaagaacaaagtatgtttt 29921925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 3343453 - 3343510
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  3343453 aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata 3343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 184 - 240
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||    
T  184 atattgctcatctatgccaccatggataagttctaaagccttcttcttagccctata 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20590416 - 20590472
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||    
T  20590416 atattgctcatctatgccaccatggataagttctaaagccttcttcttagccctata 20590472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 25244 - 25301
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  25244 aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata 25301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 17099177 - 17099120
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  17099177 aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata 17099120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 14767129 - 14767073
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||| ||||||    
T  14767129 atattgctcatctatggcaccatggataagttccaaagccttcttcttagtcctata 14767073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 11332835 - 11332929
Alignment:
Q  166 ttctcagccaacaaagcagtcttaatcaaccaaattttttcagtgttatgacatttatggtcagggttattcctagcaagaacaaagtaagtttt 260  Q
    |||| ||||||||||| ||| ||||||||   |||| |  ||||||| ||||| ||||| ||||||||||  ||||| ||||||||||| |||||    
T  11332835 ttcttagccaacaaagaagttttaatcaatttaattctcccagtgttgtgacagttatgatcagggttataactagctagaacaaagtatgtttt 11332929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11332679 - 11332735
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||||||||||||  ||||||| || || |||||| |||| ||||||||||||||    
T  11332679 atattgctcatctatggcaccatgtataagctccaaatccttcttcttagccctata 11332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University