View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-1-Insertion-19 (Length: 187)

Name: NF2911-1-Insertion-19
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-1-Insertion-19
NF2911-1-Insertion-19
[»] chr7 (12 HSPs)
chr7 (8-187)||(19937388-19937567)
chr7 (8-187)||(19968527-19968706)
chr7 (8-147)||(20293037-20293176)
chr7 (8-97)||(47602093-47602182)
chr7 (65-150)||(20242025-20242110)
chr7 (24-120)||(20169585-20169681)
chr7 (135-187)||(47602241-47602293)
chr7 (9-111)||(20006889-20006991)
chr7 (65-150)||(20262658-20262743)
chr7 (39-147)||(20230078-20230186)
chr7 (39-120)||(20064059-20064140)
chr7 (26-93)||(20302293-20302360)
[»] chr4 (1 HSPs)
chr4 (26-147)||(40820683-40820804)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 19937567 - 19937388
Alignment:
Q  8 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937567 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat 19937468  T
Q  108 tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937467 tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttc 19937388  T

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Target: chr7; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 19968706 - 19968527
Alignment:
Q  8 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968706 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat 19968607  T
Q  108 tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968606 tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttc 19968527  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 20293176 - 20293037
Alignment:
Q  8 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat 107  Q
    ||||||||||| ||  |||||||||| |||||| ||||||| ||| |||| || ||  |||| ||| |||||||||||||||||||||||||   ||||     
T  20293176 ctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaac 20293077  T
Q  108 tacagcttgcaaaatgtccacatacaccataaacatcaca 147  Q
    |||||||||||||    ||||||| |||||||||||||||    
T  20293076 tacagcttgcaaaggccccacatataccataaacatcaca 20293037  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 47602093 - 47602182
Alignment:
Q  8 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgag 97  Q
    ||||||||||| ||  | ||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  47602093 ctcctaacacacccaccagtccatttttgtctattccatttctctttgttccttggttcaaaccctttcaaatagctacatattagtgag 47602182  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 20242110 - 20242025
Alignment:
Q  65 tcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtccacatacaccataaacatcacattc 150  Q
    ||||| ||||||||||| || || | |||||||||   |||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  20242110 tcaaatcctttcaaacaactgcaaactggtgagctcaatgaattacagcttgtaaaatctccacatagaccataaacatcacattc 20242025  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 20169585 - 20169681
Alignment:
Q  24 cggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaa 120  Q
    ||||||| || ||| |||||||||  ||| |||| || || ||||||||| |||||||||||||| ||||||||||   ||||||||| ||||||||    
T  20169585 cggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaa 20169681  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 47602241 - 47602293
Alignment:
Q  135 cataaacatcacattccatttcatgactattccatgttactttccattctttc 187  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||||||||    
T  47602241 cataaacatcacattccatttgagaactattccacgttactttccattctttc 47602293  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 20006889 - 20006991
Alignment:
Q  9 tcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaatt 108  Q
    ||||||||||||| |  |||||||||||| ||||||| || |  ||||| ||||| |||||||||| |||||| ||||| ||||| || | || ||||||    
T  20006889 tcctaacacatccattagtccaattttgtctattccactcttgattgtttcttggttcaaacccttccaaacacctacaaattggcgacccttttgaatt 20006988  T
Q  109 aca 111  Q
    |||    
T  20006989 aca 20006991  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 20262743 - 20262658
Alignment:
Q  65 tcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtccacatacaccataaacatcacattc 150  Q
    ||||| ||||||||||| || ||||  ||||||||   |||||||||||||| ||| | |||||| | ||||||||||||||||||    
T  20262743 tcaaatcctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcacattc 20262658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 20230186 - 20230078
Alignment:
Q  39 tattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtccacatacaccata 138  Q
    |||||||||||| | |||||   || |||||||||||||||||||| || ||||| | |||   |||||||||||||| |||    ||||||| ||||||    
T  20230186 tattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccccacatagaccata 20230087  T
Q  139 aacatcaca 147  Q
    |||||||||    
T  20230086 aacatcaca 20230078  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 20064059 - 20064140
Alignment:
Q  39 tattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaa 120  Q
    |||||||||||| | || |||| || ||||| |||||||||||||| |||||||||| | |   |||| |||||||||||||    
T  20064059 tattccattcctgtatgctcctaggttcaaatcctttcaaacagctgcatattggtgtgttcaatgaactacagcttgcaaa 20064140  T

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Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 20302360 - 20302293
Alignment:
Q  26 gtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattgg 93  Q
    |||||||| | | |||||||||||| | ||||  |||| |||||||||||||||||||| || |||||    
T  20302360 gtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaattgg 20302293  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 40820683 - 40820804
Alignment:
Q  26 gtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtc 125  Q
    |||||||| ||| || ||||||| ||| |||| || ||  |||| ||| | ||||||||||||||||| |||||   | || |||||||||||||   |     
T  40820683 gtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgcaaatgctg 40820782  T
Q  126 cacatacaccataaacatcaca 147  Q
    |||||| |||||||||||||||    
T  40820783 cacatataccataaacatcaca 40820804  T

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