View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-1-Insertion-2 (Length: 1047)
Name: NF2911-1-Insertion-2
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-1-Insertion-2 |
 | |
|
| [»] scaffold0205 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 868; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 868; E-Value: 0
Query Start/End: Original strand, 7 - 1036
Target Start/End: Original strand, 46015981 - 46017009
Alignment:
| Q |
7 |
aaaaagaaaaccaaccatttcatggggatagtaataccgtctgatctgtccggtgaggatggatggtaacaatggtaacggtacgtacggtgctctgatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46015981 |
aaaaagaaaaccaaccatttcatggggatagtaataccgtctgatctgtccgctgaggatggatggtaacaatggtaacggtac----ggtgctctgatg |
46016076 |
T |
|
| Q |
107 |
tggtggcgatgcaatctcacggtggaacaaaaggtgttgcaggcacgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaagaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
46016077 |
tggtggcgatgcaatctcacggtggaacgaaaggtgttgcaggcacgttagcactccgacgatcaaatcagtatgagaaatgagaggagtgtgtaagaaa |
46016176 |
T |
|
| Q |
207 |
gtgagtcatactttatgggggaagcaaggtcacccttatataagcgtgagtgagagtaaccgtctccatgtgatgtggcgcctcatcagaaggccgttga |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46016177 |
gtgagtcataccttatgggggaagcaaggtcacccttatataagcgtgcgtgagagtaactgtctccatgtgatgtggcgcctcatcaggaggccgttga |
46016276 |
T |
|
| Q |
307 |
gagacatgtgtacgatgcttgacgtacgggggcgtgctccagtaaggtaggcgtaccgttagttagcatagtcttttaggcatttagtccacatgtcttc |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46016277 |
cagacatgtgtacggtgcttgacgtacgggggcgtgctccagtaaggtaggcgtaccattagttagcatagtcttttaggcatttagtccacatgtcttc |
46016376 |
T |
|
| Q |
407 |
gtaggattgaccatctggccagtccggaacaccttcattgttaatttgttactgtaatctctaccaaaattacaaaaatatatttgaatgtatcttttat |
506 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46016377 |
gtaggattgaccatctgaccggtccagaacaccttcattgttaatttgttactgtaatctctaccaaaattacaagaatatatttgaatgtatcttttat |
46016476 |
T |
|
| Q |
507 |
ttatcatttcatcatcaaatgtatttttcattagttaatttaatcatctaatgtgttttattttgtcaatttagccaataaactacctgcagaagaaaca |
606 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46016477 |
ttgtcatttcatcatcaaatgtatttttcattagttaatttaatcatctaatgtgttttattttgtcaatttagccaataaactacctgcagaagaaaca |
46016576 |
T |
|
| Q |
607 |
cttaatgccatatttaaaattttgttacattatgatgctataataacaaaggactg-aatgtttgtttacattttgatattgaagtttcaccatctctct |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46016577 |
cttaatgccatatttaaaattttgttacattatgatgctataataacaaaggactgaaatgtttgtttacatttcgatattgaagtttcaccatctctct |
46016676 |
T |
|
| Q |
706 |
tacttcataactcaagtacatgaaacaacttttatttttcttttgaaatatacatgagaagaatctctttaatgcggcataaattcatcaagtcttgtgc |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46016677 |
tacttcataactcaagtacatgaaacaacttttatttttcttttgaaatatacatgagaagaatctctttaatgcggcattaattcatcaagtcttgtgc |
46016776 |
T |
|
| Q |
806 |
taccaaaccactctcaaggagtgtacaaattgtgta-cctatgaaacaacttttcctaatttctaacaggtgacactgtttaacatgtacaatcaaataa |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46016777 |
taccaaaccactctcaaggagtgtacaaattgtgtaccctatgaaacaacttttcctaatttctaacaggtgacactgtttaacatgtacaatcaaataa |
46016876 |
T |
|
| Q |
905 |
ctactcttttctaaatctctgctattataaagtaagggtattatgggttacaggtgcagtctgatacttgagtcacttagatttaataacagtact--gt |
1002 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
46016877 |
ctactc-tttctaaatctctgctattataaagtaagggtattat-ggttacaggtgcagtctgatacttgagtcacttagatttaat-acagtacttggt |
46016973 |
T |
|
| Q |
1003 |
tactgac-attttaatggcaag-aagcagtgattta |
1036 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
46016974 |
acctgacaattttaattgcaagaaagcagtgattta |
46017009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 204 - 349
Target Start/End: Original strand, 8019020 - 8019163
Alignment:
| Q |
204 |
aaagtgagtcatactttatgggggaagcaaggtcacccttatataagcgtgagtgagagtaaccgtctccatgtgatgtggcgcctcatcagaaggccgt |
303 |
Q |
| |
|
||||||| |||||| || ||| ||||| | |||||||||||||| ||||| |||||| ||||||||||| |||||| |||||||||||| ||| ||| |
|
|
| T |
8019020 |
aaagtgaatcataccttgggggtgaagctatgtcacccttatataggcgtgtgtgagaataaccgtctcc--gtgatgcggcgcctcatcaagaggtcgt |
8019117 |
T |
|
| Q |
304 |
tgagagacatgtgtacgatgcttgacgtacgggggcgtgctccagt |
349 |
Q |
| |
|
||| |||| ||||||| ||| ||| ||||| |||||||||||||| |
|
|
| T |
8019118 |
tgaaggacacgtgtacggtgcctgatgtacgtgggcgtgctccagt |
8019163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 4601597 - 4601547
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4601597 |
cggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtc |
4601547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 21098955 - 21098905
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
21098955 |
cggtggaacgaaaggtggctgcaggcacattagcactccgacgatcaagtc |
21098905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 8018951 - 8018996
Alignment:
| Q |
146 |
caggcacgttagcactccgacgatcaagtcggtatgagaaatgaga |
191 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||| ||||||||| |
|
|
| T |
8018951 |
caggcacgttagcactacgacgctcaagtcagtatgggaaatgaga |
8018996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 8007079 - 8006979
Alignment:
| Q |
109 |
gtggcgatgcaatctcacggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaagaaag |
207 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| ||||||| |||||||||| |||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
8007079 |
gtggcgatgcaatctcatggtgggacgaaaggtgcctgcaggctcgttagcactttgacgatcaagtcaatatgagaaatgaga-gaatgtgtaagaaag |
8006981 |
T |
|
| Q |
208 |
tg |
209 |
Q |
| |
|
|| |
|
|
| T |
8006980 |
tg |
8006979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 27772561 - 27772459
Alignment:
| Q |
227 |
gaagcaaggtcacccttatataagc--gtgagtgagagtaaccgtctccatgtgatgtggcgcctcatcagaaggccgttgagagacatgtgtacgatgc |
324 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||| ||||||||||||| ||||||||||||||| ||||| | | |||||| |||| ||||||| ||| |
|
|
| T |
27772561 |
gaagcaaggtcacccttatataggcacgtgtgtg-gagtaaccgtctctgtgtgatgtggcgccttatcaggggtctgttgagggacacgtgtacggtgc |
27772463 |
T |
|
| Q |
325 |
ttga |
328 |
Q |
| |
|
|||| |
|
|
| T |
27772462 |
ttga |
27772459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 14184653 - 14184604
Alignment:
| Q |
126 |
cggtggaacaaaaggtg-ttgcaggcacgttagcactccgacgatcaagt |
174 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
14184653 |
cggtggaacgaaaggtgattgcaggcacattagcactccgacgatcaagt |
14184604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 50151890 - 50151834
Alignment:
| Q |
147 |
aggcacgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaag |
203 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
50151890 |
aggcacgtcagcactccgacgatcatgtcagtataagaaatgagaggagtgtgtaag |
50151834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 14666949 - 14666899
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14666949 |
cggtggaacaaaaggtgcctgcaggcacgttagcactccgacgatcaagtc |
14666899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 4565503 - 4565454
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagt |
174 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
4565503 |
cggtggaacgaaaggtgtctgcaggcatgttagcactccgacaatcaagt |
4565454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 8778892 - 8778950
Alignment:
| Q |
151 |
acgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaagaaagtg |
209 |
Q |
| |
|
|||||||| ||| ||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
8778892 |
acgttagcgctctgacgatcaaatcagtatgagaaatgagagaagtgtgtaagaaagtg |
8778950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 26348189 - 26348139
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
26348189 |
cggtggaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtc |
26348139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 5925586 - 5925535
Alignment:
| Q |
125 |
acggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
5925586 |
acggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtc |
5925535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 17149943 - 17149991
Alignment:
| Q |
126 |
cggtggaacaaaaggtgttgcaggcacgttagcactccgacgatcaagt |
174 |
Q |
| |
|
|||||| || ||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
17149943 |
cggtggcacgaaaggtgctgcatgcacgttagcactccgacgatcaagt |
17149991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 11025 - 10975
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
11025 |
cggtggaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtc |
10975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 20120325 - 20120378
Alignment:
| Q |
123 |
tcacggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
20120325 |
tcacggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtc |
20120378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 23257880 - 23257922
Alignment:
| Q |
231 |
caaggtcacccttatataagcgtgagtgagagtaaccgtctcc |
273 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
23257880 |
caaggtcacccttatataggcgtgtgtgagaataaccgtctcc |
23257922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 29710999 - 29711049
Alignment:
| Q |
126 |
cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| ||| ||||||| |
|
|
| T |
29710999 |
cggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtc |
29711049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 69333 - 69284
Alignment:
| Q |
127 |
ggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc |
175 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
69333 |
ggtggaacaaaaggtgcctgcaggcacgttagcactccaacgctcaagtc |
69284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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