View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-1-Insertion-3 (Length: 1011)
Name: NF2911-1-Insertion-3
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-1-Insertion-3 |
 | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 292 - 606
Target Start/End: Complemental strand, 16832798 - 16832485
Alignment:
| Q |
292 |
ttctagaggttttggcttctcctctttattctaatcacattcaaacttttgttgttatatgtattttagttgagtattgcccaagtactataagcataat |
391 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16832798 |
ttctaggggttttggcttttcctttttattctaatcacataaaaacttttgtt---atatgtattttagttgagtatttcccaagtactataagcataat |
16832702 |
T |
|
| Q |
392 |
gcataatcaaagactcgcattaattcatttaagtttgcacgtgaccctggccctaaccttctcccgttttcattttctcgttcttccaaggcttttggcg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
16832701 |
gcataatcaaagactcgcattaattcatttcagtttgcaggtgaccctggccctaaccttaacccgtcttcattttctcgttcttcaaaggcttttggca |
16832602 |
T |
|
| Q |
492 |
ttttcgtcgatcatcttcttcactatgtgcccatgatcagaggtttctcaatctgaactgcagtttaggcagattattta--tctttacatagttgatca |
589 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
16832601 |
ttttcgtcgatcaccttcttcactatgtgcccatgatcagaggtttctcaatctgaactgcagtttaggcagattatttatctctttacatggttgataa |
16832502 |
T |
|
| Q |
590 |
gttttgaagtacaatag |
606 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
16832501 |
gtcttgaagtacaatag |
16832485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 624 - 791
Target Start/End: Complemental strand, 16832435 - 16832268
Alignment:
| Q |
624 |
tcgcttctttggtaatgttctgtattctatgtgagttaaacaccttgttccctggtatattttatgttgatattctactttcctatacactaacctgata |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16832435 |
tcgcttctttggtaatgttctgtattctatgtgagttaaacaccttattccctggtacattttgtgttgatattctactttcctataaactaacctgata |
16832336 |
T |
|
| Q |
724 |
gagtgatttcttgatattgttaacctttagtttagcactcgaattttctttattcggaaaaagaaata |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
16832335 |
gagtgatttcttgatattgttaacctttagtttagcacttgaattttctttattcggaaaacgaaata |
16832268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 542 - 597
Target Start/End: Original strand, 16873797 - 16873852
Alignment:
| Q |
542 |
atctgaactgcagtttaggcagattatttatctttacatagttgatcagttttgaa |
597 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
16873797 |
atctgaagtgcagtttaggcacattatttctctttacatggttgatcagttttgaa |
16873852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 542 - 597
Target Start/End: Original strand, 16571842 - 16571897
Alignment:
| Q |
542 |
atctgaactgcagtttaggcagattatttatctttacatagttgatcagttttgaa |
597 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
16571842 |
atctgaactgcagattaggcacattatttctctttacatggtttatcagttttgaa |
16571897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 16985033 - 16985066
Alignment:
| Q |
61 |
ataagtctaaaatcacaccatataatttgatata |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16985033 |
ataagtctaaaatcacaccatataatttgatata |
16985066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 16655635 - 16655679
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataatttgatat |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
16655635 |
ttgttcaatataataagtctataatcacaccatctgatttgatat |
16655679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 16870498 - 16870454
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataatttgatat |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
16870498 |
ttgttcaatataataagtctataatcacaccatctaattttatat |
16870454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 16558670 - 16558631
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataattt |
88 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
16558670 |
ttgttcaatataataagtctataatcacaccatctaattt |
16558631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 17067043 - 17067082
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataattt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17067043 |
ttgttcaatataataagtctaaaatcacagtatataattt |
17067082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 597
Target Start/End: Complemental strand, 11921 - 11866
Alignment:
| Q |
542 |
atctgaactgcagtttaggcagattatttatctttacatagttgatcagttttgaa |
597 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
11921 |
atctgaattgcagtttaggcacattattactctttacacggttgatcagttttgaa |
11866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University