View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-1-Insertion-5 (Length: 968)
Name: NF2911-1-Insertion-5
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-1-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 784; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 8 - 968
Target Start/End: Complemental strand, 32815697 - 32814777
Alignment:
| Q |
8 |
ccagttgttgcgttgaatgaaagaatactttcttccatggctgataagaaagatgctgttgctcatccatggcatgacttagagattggtattattatta |
107 |
Q |
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| T |
32815697 |
ccagttgttgcgttgaatgaaagaatactttcttccatggctgataagaaagatgctgctgctcatccatggcatgacttagagattggtattattatta |
32815598 |
T |
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| Q |
108 |
actaactcttttttacgtttctttattcttctttctgcttcaacaatctctccgtacttttaacaatatctttgaattctcataaatgcaggaccgggag |
207 |
Q |
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| T |
32815597 |
actaactcttttttacgtttctttattcttctttctgcttcaacaatctctctgtacttttaaca-----------------taaatgcaggaccaggag |
32815515 |
T |
|
| Q |
208 |
ctccatctgttttcaattgtgtaagtttcttttatttgctgtattcnnnnnnnattcatgcattcaatgtttgtacttctagttaatgcaactaaacgaa |
307 |
Q |
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| T |
32815514 |
ctccatctgttttcaattgtgtaagtttctttt--------tatt----------tgatgtattcaatgtttgtacttctagttaatgcaactaaacgaa |
32815433 |
T |
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| Q |
308 |
gtcttaataaatggtgtaaagtgaattctgttgttgtaggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggactta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32815432 |
gtcttaataaatggtgtaaagtgaattctgttgttgtaggtggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggactta |
32815333 |
T |
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| Q |
408 |
ttaaggtatcattaatttcatctgattccgaaaatatcgttgattcgatgggaaaatataaaggctgtttcttttaagggaatcatataataatttacaa |
507 |
Q |
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| T |
32815332 |
ttaaggtatcattaatttcatctgattccgaaaatatggttgattcgatgggaaaatataaaggctgtttcttttaagggaatcatataataatttacaa |
32815233 |
T |
|
| Q |
508 |
tttctacaattctgccaaattaattgtgaagacttattttcctttgcaagcaccagattttacatgtctaagtttttacgagtaagattgataatgttta |
607 |
Q |
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| T |
32815232 |
tttctacaattctgccaaattaattgtgaagacttattttcctttgcaagcaccagattttacatgtctaagtttttacgagtaagattgataatgttta |
32815133 |
T |
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| Q |
608 |
atgtttaggttgcaaagtggtttgatttatagtatagacagatagaagttcaaaagataattcaaatactttcaattcgttgtggtttcatattatgtgt |
707 |
Q |
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| T |
32815132 |
atgtttaggttgcaaagtggtttgatttatagtatagacagatagaagttcaaaagataatgcaaatactttcaattcgttgtggtttcatattatgtgt |
32815033 |
T |
|
| Q |
708 |
tattgagctatgtactttagattgaaggtgtgttcaatgtccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgttt |
807 |
Q |
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| T |
32815032 |
tattgagctatgtactttagattgaaggtgtgttcaatgtccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgttt |
32814933 |
T |
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| Q |
808 |
catagttattgagctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatgctttgggtttctggatgtaaaatttgtgtttgtttgtt |
907 |
Q |
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| T |
32814932 |
catagttattgagctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatgcttt-ggtttctggatgtaaaatttgtgtttgtttgtt |
32814834 |
T |
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| Q |
908 |
ctgaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcag |
968 |
Q |
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| T |
32814833 |
----agcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcag |
32814777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 29368039 - 29368109
Alignment:
| Q |
344 |
taggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggt |
414 |
Q |
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| T |
29368039 |
taggtggttgaaattggaaaaggaaacaaggtgaaatatgaacttgacaagaaaactggacttattaaggt |
29368109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 43547797 - 43547867
Alignment:
| Q |
344 |
taggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggt |
414 |
Q |
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| T |
43547797 |
taggtgattgaaattgggaaaggaaacaaggtcaaatatgaacttgacaaaaaaactggacttattaaggt |
43547867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 7985560 - 7985635
Alignment:
| Q |
345 |
aggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggtatcatt |
420 |
Q |
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| T |
7985560 |
aggtgattgaaattggcaaaggaagcaaggttaagtatgagttggacaagacaagtggacttataaaggtgtcatt |
7985635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 348 - 418
Target Start/End: Complemental strand, 11775988 - 11775918
Alignment:
| Q |
348 |
tggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggtatca |
418 |
Q |
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| T |
11775988 |
tggttgaaattggcaaaggaagcaatgttaagtaataactggacaagaaaagtagacttcttaaagtatca |
11775918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 910 - 966
Target Start/End: Original strand, 7986393 - 7986449
Alignment:
| Q |
910 |
gaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatc |
966 |
Q |
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| T |
7986393 |
gaagcataactaactcatgggctaaataccttaggttgatcgtattctttactcatc |
7986449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 7985258 - 7985304
Alignment:
| Q |
189 |
ataaatgcaggaccgggagctccatctgttttcaattgtgtaagttt |
235 |
Q |
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| T |
7985258 |
ataaatgcagggccaggagctccatcagttttcaactgtgtaagttt |
7985304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 348 - 418
Target Start/End: Complemental strand, 3091263 - 3091193
Alignment:
| Q |
348 |
tggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggtatca |
418 |
Q |
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||||||||||||||||||||||||| |||| || ||| ||| |||||||| ||||||||||| |||||| |
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| T |
3091263 |
tggttgaaattggcaaaggaagcaaaattaagtaataacgggacaagaaaagtggacttattaaagtatca |
3091193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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