View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-1-Insertion-6 (Length: 786)

Name: NF2911-1-Insertion-6
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-1-Insertion-6
NF2911-1-Insertion-6
[»] chr2 (6 HSPs)
chr2 (4-773)||(19054884-19055651)
chr2 (4-173)||(19190999-19191168)
chr2 (4-163)||(6897692-6897851)
chr2 (616-683)||(29503319-29503386)
chr2 (618-683)||(20217864-20217929)
chr2 (616-683)||(37480123-37480191)
[»] chr8 (8 HSPs)
chr8 (618-683)||(18897214-18897279)
chr8 (629-683)||(35690038-35690092)
chr8 (616-683)||(28783108-28783176)
chr8 (616-683)||(16843755-16843822)
chr8 (616-681)||(8059682-8059748)
chr8 (629-683)||(19703461-19703515)
chr8 (629-683)||(23361623-23361677)
chr8 (616-683)||(36205243-36205309)
[»] chr4 (6 HSPs)
chr4 (616-683)||(7949414-7949482)
chr4 (616-683)||(32992660-32992728)
chr4 (616-683)||(37274419-37274487)
chr4 (29-156)||(51730427-51730554)
chr4 (618-683)||(46295145-46295211)
chr4 (616-680)||(37720174-37720239)
[»] chr7 (7 HSPs)
chr7 (621-683)||(42712006-42712069)
chr7 (616-683)||(2882998-2883065)
chr7 (618-683)||(19553501-19553567)
chr7 (616-683)||(21558176-21558244)
chr7 (620-683)||(38374563-38374627)
chr7 (639-682)||(7721418-7721461)
chr7 (616-680)||(30579386-30579451)
[»] chr1 (3 HSPs)
chr1 (616-683)||(17745217-17745284)
chr1 (621-683)||(43446011-43446074)
chr1 (616-680)||(29753700-29753765)
[»] chr3 (1 HSPs)
chr3 (630-683)||(14186695-14186748)


Alignment Details
Target: chr2 (Bit Score: 686; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 4 - 773
Target Start/End: Complemental strand, 19055651 - 19054884
Alignment:
Q  4 aacaaggtcattagtaccttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 103  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055651 aacaaggtcactagttgcttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 19055552  T
Q  104 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagtagtacttctgaaaatcaagttgagagtaaaataattaggtttatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19055551 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagcagtacttctgaaaatcaagttgagagtaaaataattaggtttatc 19055452  T
Q  204 aataaaattattaaaacaaaattaccaacatgtaaactaaattaaaggctatgctgttgttaaccaaagatgtttaaaatccttgatatctagataggat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055451 aataaaattattaaaacaaaattaccaacatgtaaactaaattaaaggctatgctgttgttaaccaaagatgtttaaaatccttgatatctagataggat 19055352  T
Q  304 aatatgcacttctccatttcttacataatattccctataataagaacannnnnnncccttctatttgttactaatttttacacgtgcatatgtattatgt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||  |||||||||    
T  19055351 aatatgcacttctccatttcttacataatattccctataataagaacatttttttcccttctatttgttactaatttttacacgtgcat--gtattatgt 19055254  T
Q  404 ttctattagagaaacaggtaaaggacacctgaaaagggacaaacaatgtcaattggtccataaaatgataaattcaaaataggtttattctatgcatgtt 503  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19055253 ttctataagagaaacaggtaaaggacacctgaaaagggacaaacaatttcaattggtacataaaatgataaattcaaaatagatttattctatgcatgtt 19055154  T
Q  504 tactcttttatattaagttttcttgttctttcatagactccatcaataattatctagggtcacattcgccatcaaaattcctcactttgttaaaattatg 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  19055153 tactcttttatattaagttttcttgttctttcatagactccatcaataattatctagggtcacattcaccatcaaaattcctcactttgttaaaattatc 19055054  T
Q  604 atcaaatgcgactgaagaagctaaatagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagctccttattattattttacaa 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055053 atcaaatgcgactgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagctccttattattattttacaa 19054954  T
Q  704 ttttaaattaatgagattttaaaacattcaactttttcgtctctaatgtaattttcataactcattttaa 773  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  19054953 ttttaaattaatgagattttaatacattcaactttttcgtctctaatgtaattttcatcactcattttaa 19054884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 19190999 - 19191168
Alignment:
Q  4 aacaaggtcattagtaccttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19190999 aacaaggtcattagtagcttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttaaacacctcaggtcccttgttgcatggaaatgtt 19191098  T
Q  104 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagtagtacttctgaaaat 173  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||  ||||||||    
T  19191099 ggcatcaatggtatgtctccatattttccagtgcaaacaacaacaaactcgaagtggtaccgctgaaaat 19191168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 6897692 - 6897851
Alignment:
Q  4 aacaaggtcattagtaccttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 103  Q
    |||||||||| |||||  ||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||    
T  6897692 aacaaggtcagtagtagattcgttgtcaagtttacaatactcaatggtatgcaaagccttacccttgaacacctcagggcccttgttgtatggaaatttt 6897791  T
Q  104 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagtagtac 163  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  6897792 ggcatcaatggtatatctccatattttccagtgcaaaccactataaactcgaagtggtac 6897851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 29503386 - 29503319
Alignment:
Q  616 tgaagaagctaaata-gcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||||  ||||||||||||||| ||| ||||||||||||| | |||||||||||||||||    
T  29503386 tgaagaagctaaatttgcccacttaaattgacacc-gggagaatcgaacctgagaccttgaggaggagc 29503319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 20217929 - 20217864
Alignment:
Q  618 aagaagctaaatagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||||||||| ||||||  ||  || |||||||||| | |||||||||||||||||    
T  20217929 aagaagctaaatagcccactcaaattggcacatggaagaatcgaacctaagaccttgaggaggagc 20217864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 37480191 - 37480123
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| |||||||  ||||||  ||| ||||||||||||| | |||||||||||||||||    
T  37480191 tgaagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagc 37480123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 18897279 - 18897214
Alignment:
Q  618 aagaagctaaatagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||| ||||| |||||||  |||||| |||||||||||| |||||||||||||||||    
T  18897279 aagaagctaaatatcccacctaaattggcaccaggaagaatcgaacatgagaccttgaggaggagc 18897214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 35690038 - 35690092
Alignment:
Q  629 tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||| ||||||||||| ||||| ||||||||||| | |||||||||||||||||    
T  35690038 tagcctacttaaattgacaccagagagaatcgaacctgagaccttgaggaggagc 35690092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 28783176 - 28783108
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| |||||||  ||||||  |||  |||||||||||||| |||||||||||||||||    
T  28783176 tgaagaagctaaattagcccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagc 28783108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 16843755 - 16843822
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||||||||||  |||||||| ||| | ||||||||||| | ||| |||| ||||||||    
T  16843755 tgaagaagctaaatagcccatctaaattgacaccggagagaatcgaacctgagatcttgcggaggagc 16843822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 681
Target Start/End: Complemental strand, 8059748 - 8059682
Alignment:
Q  616 tgaagaagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggagga 681  Q
    ||||||||||||| |||| |||| ||||||| | |||||||||| |||| | |||||||||||||||    
T  8059748 tgaagaagctaaactagctcactcaaattgacatcagggagaatggaacctgagaccttgaggagga 8059682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 19703461 - 19703515
Alignment:
Q  629 tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||| | |||||| || |||||||||||||| | |||||||||||||||||    
T  19703461 tagcccaccttaattgacactagggagaatcgaacctgagaccttgaggaggagc 19703515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 23361623 - 23361677
Alignment:
Q  629 tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||| |||||||| ||||| |||||| |||| | |||||||||||||||||    
T  23361623 tagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagc 23361677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 36205309 - 36205243
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| || |||  ||||||||  || ||||||||||||||| |||||||||||||||||    
T  36205309 tgaagaagctaaattagtccatctaaattga--ccggggagaatcgaacatgagaccttgaggaggagc 36205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 7949414 - 7949482
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| ||||||| |||||||| ||||| ||||||||||| | |||||||||||||||||    
T  7949414 tgaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagc 7949482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 32992728 - 32992660
Alignment:
Q  616 tgaagaagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||| ||| ||||| ||||||| ||| ||||||||||||| | |||||||||||||||||    
T  32992728 tgaagaagctaaactagtccactcaaattgacaccggggagaatcgaacttgagaccttgaggaggagc 32992660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 37274419 - 37274487
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| ||||||||||||||   ||||| ||||||||||| | |||||||||||||||||    
T  37274419 tgaagaagctaaattagcccacttaaattagcaccagagagaatcgaacctaagaccttgaggaggagc 37274487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 51730427 - 51730554
Alignment:
Q  29 tcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgttggcatcaatggtatgtctccatatt 128  Q
    ||||||||||| |||||||  ||||| |  || || || ||||| |||||||| || || ||||||||||||  ||| |||   |||||||| |||||||    
T  51730427 tcaagtttacagtaatcaagtgtatgtaggacattgccattgaatacctcagggccttttttgcatggaaatactggaatcttaggtatgtccccatatt 51730526  T
Q  129 ttccagtgcaaaccactacaaactcgaa 156  Q
    | |||  ||||||||| |||||||||||    
T  51730527 tcccaacgcaaaccaccacaaactcgaa 51730554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 46295211 - 46295145
Alignment:
Q  618 aagaagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||| ||||||||  ||||||  ||| ||||||||||||| | |||||||||||||||||    
T  46295211 aagaagctaaactagcccacccaaattggcaccggggagaatcgaacctgagaccttgaggaggagc 46295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 680
Target Start/End: Original strand, 37720174 - 37720239
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggagg 680  Q
    |||||||||||||| ||||||| ||||||||  || ||||||||||||| |  |||||||||||||    
T  37720174 tgaagaagctaaattagcccacctaaattgatccctgggagaatcgaacctgggaccttgaggagg 37720239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 42712069 - 42712006
Alignment:
Q  621 aagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||| ||||||| |||||||| || |||||||||||||||| |||||||||||||||||    
T  42712069 aagctaaattagcccacctaaattgacactagggagaatcgaacatgagaccttgaggaggagc 42712006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 2883065 - 2882998
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||| |||||||| |||||||  ||||| |||||| |||| | |||||||||||||||||    
T  2883065 tgaagaagctaagtagcccacctaaattgccaccagagagaattgaacctgagaccttgaggaggagc 2882998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 19553567 - 19553501
Alignment:
Q  618 aagaagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||| |||||||| ||||||| |||| |||||||| |||| | |||||||||||||||||    
T  19553567 aagaagctaaagtagcccacctaaattggaaccggggagaattgaacctaagaccttgaggaggagc 19553501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 21558244 - 21558176
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| | ||||| |||||||  ||||| ||||||||||| | |||||||||||||||||    
T  21558244 tgaagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgaggaggagc 21558176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 683
Target Start/End: Original strand, 38374563 - 38374627
Alignment:
Q  620 gaagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||| |||||||| |||||||  ||| ||||||||||||| | |||||||||||||||||    
T  38374563 gaagctaaactagcccacctaaattggcaccggggagaatcgaacctaagaccttgaggaggagc 38374627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 682
Target Start/End: Complemental strand, 7721461 - 7721418
Alignment:
Q  639 aaattgaaaccagggagaatcgaacatcagaccttgaggaggag 682  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||    
T  7721461 aaattgacaccagagagaatcgaacatgagaccttgaggaggag 7721418  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 680
Target Start/End: Complemental strand, 30579451 - 30579386
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggagg 680  Q
    |||||||||||||| ||||||| |||||||  ||||| || |||||||| | ||||||||||||||    
T  30579451 tgaagaagctaaattagcccacctaaattggcaccagagaaaatcgaacctgagaccttgaggagg 30579386  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 17745217 - 17745284
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||||   |||| |||||||| ||||| ||||||||||||| |||||| ||||||||||    
T  17745217 tgaagaagctaaattaaccacctaaattgacaccagagagaatcgaacatgagacctcgaggaggagc 17745284  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 43446074 - 43446011
Alignment:
Q  621 aagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||| ||||||||| ||||||  ||| ||||||||||||||| |||||||||||||||||    
T  43446074 aagctaaactagcccactcaaattggcaccggggagaatcgaacatgagaccttgaggaggagc 43446011  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 680
Target Start/End: Complemental strand, 29753765 - 29753700
Alignment:
Q  616 tgaagaagctaaa-tagcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggagg 680  Q
    ||||||||||||| || ||| |||||||||  ||||| ||||||||||| | ||||||||||||||    
T  29753765 tgaagaagctaaactaaccctcttaaattggcaccagagagaatcgaacctgagaccttgaggagg 29753700  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 683
Target Start/End: Complemental strand, 14186748 - 14186695
Alignment:
Q  630 agcccacttaaattgaaaccagggagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||| |||||||| ||| | ||||||||||| | |||||||||||||||||    
T  14186748 agcccacctaaattgacaccggagagaatcgaacctgagaccttgaggaggagc 14186695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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