View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-1-Insertion-7 (Length: 725)
Name: NF2911-1-Insertion-7
Description: NF2911-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-1-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 237 - 702
Target Start/End: Complemental strand, 32915697 - 32915231
Alignment:
| Q |
237 |
gaaagatactttggaaaatgttgtatcatgatttagtaaggggtaataatttaggnnnnnnncaatcaatcctttgatatatgttttgttcaatcacatg |
336 |
Q |
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| T |
32915697 |
gaaagatactttggaaaatgttgtatcatgatttagtaaggggtaataatttaggtttttttcaatcaatcctttgatatatgttttgttcaatcacatg |
32915598 |
T |
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| Q |
337 |
atcaatttataaatcaaataatgtatnnnnnnnttgtttaatgccttaatttcaaagaaatgcatccctgtaa-tttaattttgatataatttcactatt |
435 |
Q |
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| T |
32915597 |
atcaatttataaatcaaataaggtataaaaaaattgtttagtgccatgatttctaggaaatgcatccctgtaaatttaattttgatacaatttcaccatc |
32915498 |
T |
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| Q |
436 |
aacaagtaatagtcaattttaaataatgataaaatacgagtgtaactaaaaaatttattaatagaggttgggtctagtgtttaagaataggctagattcn |
535 |
Q |
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| T |
32915497 |
aacaagtaatattcaattttaaataatgataaaatgcgagtgtaactaaaaaatttattaatggaggttgggtctagtgtttaagaataggctagattc- |
32915399 |
T |
|
| Q |
536 |
nnnnnnnnnnnnnnatagccagacaaaattaatggtagcacatttagtgtgtgtcacacattgaataaaatcatctatgatgattaaatggtgcgacaca |
635 |
Q |
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||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
32915398 |
tttttcttttttttataacctgacaaaataaatggtagcacatttagtgtgtgtcacacattgaataaaatcatctatgatgatcaaatggtgtgacaca |
32915299 |
T |
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| Q |
636 |
aatgtacatatttgaatttttaacttcttaactatttagtgtagtgtttgat-ctttcatcggtacat |
702 |
Q |
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| T |
32915298 |
aatgtagatatttgaatttttaacttcttaatcatttagtctagtgtttgatcctttcatcagtacat |
32915231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 32915890 - 32915840
Alignment:
| Q |
8 |
caagtaaccttgtttctgttgagttcacaaagacctaattaaccttaactt |
58 |
Q |
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| T |
32915890 |
caagtaaccttgtttctgttgagttcacaaagacctaattaaccttaactt |
32915840 |
T |
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