View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-2-Insertion-16 (Length: 117)
Name: NF2911-2-Insertion-16
Description: NF2911-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-2-Insertion-16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 7e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 13407941 - 13408050
Alignment:
| Q |
8 |
attttaagtcattgattctaagtttgaatattattttgagtaggtattgactttcacaatttggaaagtgtcatttatttatatgattaatttcaagtag |
107 |
Q |
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| T |
13407941 |
attttaagtcattgattctaagtttgaatattattttgagtaggtattgactttcacaatttggaaagtgtcatttatttatatgattaatttcaagtag |
13408040 |
T |
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| Q |
108 |
ttttaattga |
117 |
Q |
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| T |
13408041 |
ttttaattga |
13408050 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 19173851 - 19173774
Alignment:
| Q |
9 |
ttttaagtca-ttgattctaagtttgaatattattttgagtaggtattgactttcacaatttggaaagtgtcatttat |
85 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |
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| T |
19173851 |
ttttaagtcaattgattctaagtttgaatattatttggagcaggtattgactttcacaaattggaaagtgtcatttat |
19173774 |
T |
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