View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-2-Insertion-17 (Length: 117)
Name: NF2911-2-Insertion-17
Description: NF2911-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-2-Insertion-17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 34; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 16985033 - 16985066
Alignment:
| Q |
61 |
ataagtctaaaatcacaccatataatttgatata |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16985033 |
ataagtctaaaatcacaccatataatttgatata |
16985066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 16655635 - 16655679
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataatttgatat |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
16655635 |
ttgttcaatataataagtctataatcacaccatctgatttgatat |
16655679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 16870498 - 16870454
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataatttgatat |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
16870498 |
ttgttcaatataataagtctataatcacaccatctaattttatat |
16870454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 16558670 - 16558631
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataattt |
88 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
16558670 |
ttgttcaatataataagtctataatcacaccatctaattt |
16558631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 17067043 - 17067082
Alignment:
| Q |
49 |
ttgttcaatataataagtctaaaatcacaccatataattt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17067043 |
ttgttcaatataataagtctaaaatcacagtatataattt |
17067082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University