View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-2-Insertion-6 (Length: 786)

Name: NF2911-2-Insertion-6
Description: NF2911-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-2-Insertion-6
NF2911-2-Insertion-6
[»] chr2 (5 HSPs)
chr2 (4-773)||(19054884-19055651)
chr2 (4-173)||(19190999-19191168)
chr2 (4-163)||(6897692-6897851)
chr2 (618-683)||(20217864-20217929)
chr2 (616-683)||(29503319-29503386)
[»] chr8 (2 HSPs)
chr8 (618-683)||(18897214-18897279)
chr8 (629-683)||(35690038-35690092)
[»] chr4 (4 HSPs)
chr4 (616-683)||(7949414-7949482)
chr4 (616-683)||(32992660-32992728)
chr4 (616-683)||(37274419-37274487)
chr4 (29-156)||(51730427-51730554)
[»] chr7 (5 HSPs)
chr7 (621-683)||(42712006-42712069)
chr7 (616-679)||(41487411-41487475)
chr7 (616-683)||(2882998-2883065)
chr7 (618-683)||(19553501-19553567)
chr7 (618-683)||(29785263-29785329)
[»] chr3 (2 HSPs)
chr3 (616-663)||(50731053-50731100)
chr3 (616-663)||(50781754-50781801)
[»] chr1 (3 HSPs)
chr1 (616-683)||(17745217-17745284)
chr1 (621-683)||(43446011-43446074)
chr1 (616-676)||(23398995-23399056)


Alignment Details
Target: chr2 (Bit Score: 686; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 4 - 773
Target Start/End: Complemental strand, 19055651 - 19054884
Alignment:
Q  4 aacaaggtcactagtaccttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 103  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055651 aacaaggtcactagttgcttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 19055552  T
Q  104 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagtagtacttctgaaaatcaagttgagagtaaaataattaggtttatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19055551 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagcagtacttctgaaaatcaagttgagagtaaaataattaggtttatc 19055452  T
Q  204 aataaaattattaaaacaaaattaccaacatgtaaactaaattaaaggctatgctgttgttaaccaaagatgtttaaaatccttgatatctagataggat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055451 aataaaattattaaaacaaaattaccaacatgtaaactaaattaaaggctatgctgttgttaaccaaagatgtttaaaatccttgatatctagataggat 19055352  T
Q  304 aatatgcacttctccatttcttacataatattccctataataagaacannnnnnncccttctatttgttactaatttttacacgtgcatatgtattatgt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||  |||||||||    
T  19055351 aatatgcacttctccatttcttacataatattccctataataagaacatttttttcccttctatttgttactaatttttacacgtgcat--gtattatgt 19055254  T
Q  404 ttctattagagaaacaggtaaaggacacctgaaaagggacaaacaatgtcaattggtccataaaatgataaattcaaaataggtttattctatgcatgtt 503  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19055253 ttctataagagaaacaggtaaaggacacctgaaaagggacaaacaatttcaattggtacataaaatgataaattcaaaatagatttattctatgcatgtt 19055154  T
Q  504 tactcttttatattaagttttcttgttctttcatagactccatcaataattatctagggttacattcgccatcaaaattcctcactttgttaaaattatg 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  19055153 tactcttttatattaagttttcttgttctttcatagactccatcaataattatctagggtcacattcaccatcaaaattcctcactttgttaaaattatc 19055054  T
Q  604 atcgaatgcgactgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagctccttattattattttacaa 703  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055053 atcaaatgcgactgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagctccttattattattttacaa 19054954  T
Q  704 ttttaaattaatgagattttaaaacattcaactttttcgtctctaatgtaattttcataactcattttaa 773  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  19054953 ttttaaattaatgagattttaatacattcaactttttcgtctctaatgtaattttcatcactcattttaa 19054884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 19190999 - 19191168
Alignment:
Q  4 aacaaggtcactagtaccttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 103  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19190999 aacaaggtcattagtagcttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttaaacacctcaggtcccttgttgcatggaaatgtt 19191098  T
Q  104 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagtagtacttctgaaaat 173  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||  ||||||||    
T  19191099 ggcatcaatggtatgtctccatattttccagtgcaaacaacaacaaactcgaagtggtaccgctgaaaat 19191168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 6897692 - 6897851
Alignment:
Q  4 aacaaggtcactagtaccttctttatcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgtt 103  Q
    |||||||||| |||||  ||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||    
T  6897692 aacaaggtcagtagtagattcgttgtcaagtttacaatactcaatggtatgcaaagccttacccttgaacacctcagggcccttgttgtatggaaatttt 6897791  T
Q  104 ggcatcaatggtatgtctccatattttccagtgcaaaccactacaaactcgaagtagtac 163  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  6897792 ggcatcaatggtatatctccatattttccagtgcaaaccactataaactcgaagtggtac 6897851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 20217929 - 20217864
Alignment:
Q  618 aagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||||||||| ||||||  ||  ||||||||||||| | |||||||||||||||||    
T  20217929 aagaagctaaatagcccactcaaattggcacatggaagaatcgaacctaagaccttgaggaggagc 20217864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 29503386 - 29503319
Alignment:
Q  616 tgaagaagctaaata-gcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||||  ||||||||||||||| ||| ||| ||||||||| | |||||||||||||||||    
T  29503386 tgaagaagctaaatttgcccacttaaattgacaccggga-gaatcgaacctgagaccttgaggaggagc 29503319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 18897279 - 18897214
Alignment:
Q  618 aagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||||||| |||||||||||||||||    
T  18897279 aagaagctaaatatcccacctaaattggcaccaggaagaatcgaacatgagaccttgaggaggagc 18897214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 35690038 - 35690092
Alignment:
Q  629 tagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||| ||||||||||| |||||  |||||||||| | |||||||||||||||||    
T  35690038 tagcctacttaaattgacaccagagagaatcgaacctgagaccttgaggaggagc 35690092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 7949414 - 7949482
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| ||||||| |||||||| |||||  |||||||||| | |||||||||||||||||    
T  7949414 tgaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagc 7949482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 32992728 - 32992660
Alignment:
Q  616 tgaagaagctaaa-tagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||| ||| ||||| ||||||| ||| || |||||||||| | |||||||||||||||||    
T  32992728 tgaagaagctaaactagtccactcaaattgacaccggggagaatcgaacttgagaccttgaggaggagc 32992660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 37274419 - 37274487
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||||| ||||||||||||||   |||||  |||||||||| | |||||||||||||||||    
T  37274419 tgaagaagctaaattagcccacttaaattagcaccagagagaatcgaacctaagaccttgaggaggagc 37274487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 51730427 - 51730554
Alignment:
Q  29 tcaagtttacaataatcaatggtatgcaaaaccttacccttgaacacctcaggtcccttgttgcatggaaatgttggcatcaatggtatgtctccatatt 128  Q
    ||||||||||| |||||||  ||||| |  || || || ||||| |||||||| || || ||||||||||||  ||| |||   |||||||| |||||||    
T  51730427 tcaagtttacagtaatcaagtgtatgtaggacattgccattgaatacctcagggccttttttgcatggaaatactggaatcttaggtatgtccccatatt 51730526  T
Q  129 ttccagtgcaaaccactacaaactcgaa 156  Q
    | |||  ||||||||| |||||||||||    
T  51730527 tcccaacgcaaaccaccacaaactcgaa 51730554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 42712069 - 42712006
Alignment:
Q  621 aagctaaat-agcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||| ||||||| |||||||| || ||| |||||||||||| |||||||||||||||||    
T  42712069 aagctaaattagcccacctaaattgacactagggagaatcgaacatgagaccttgaggaggagc 42712006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 679
Target Start/End: Complemental strand, 41487475 - 41487411
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggag 679  Q
    |||||||||||||| ||||||| |||||||  ||| ||||||||||||| | |||||||||||||    
T  41487475 tgaagaagctaaattagcccacctaaattggcaccgggaagaatcgaacctgagaccttgaggag 41487411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 2883065 - 2882998
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||||||| |||||||| |||||||  |||||  ||||| |||| | |||||||||||||||||    
T  2883065 tgaagaagctaagtagcccacctaaattgccaccagagagaattgaacctgagaccttgaggaggagc 2882998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 19553567 - 19553501
Alignment:
Q  618 aagaagctaaa-tagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||| |||||||| ||||||| |||| || ||||| |||| | |||||||||||||||||    
T  19553567 aagaagctaaagtagcccacctaaattggaaccggggagaattgaacctaagaccttgaggaggagc 19553501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 683
Target Start/End: Original strand, 29785263 - 29785329
Alignment:
Q  618 aagaagctaaa-tagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||| || ||| || ||||||  ||||| ||||||||||||| |||||||||||||||||    
T  29785263 aagaagctaaactaaccccctcaaattggcaccagaaagaatcgaacatgagaccttgaggaggagc 29785329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 663
Target Start/End: Original strand, 50731053 - 50731100
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaac 663  Q
    |||||||||||||||||||| | ||||||| ||||| |||||||||||    
T  50731053 tgaagaagctaaatagcccattcaaattgacaccagtaagaatcgaac 50731100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 663
Target Start/End: Complemental strand, 50781801 - 50781754
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaac 663  Q
    |||||||||||||||||||| | ||||||| ||||| |||||||||||    
T  50781801 tgaagaagctaaatagcccattcaaattgacaccagtaagaatcgaac 50781754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 683
Target Start/End: Original strand, 17745217 - 17745284
Alignment:
Q  616 tgaagaagctaaatagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    ||||||||||||||   |||| |||||||| |||||  |||||||||||| |||||| ||||||||||    
T  17745217 tgaagaagctaaattaaccacctaaattgacaccagagagaatcgaacatgagacctcgaggaggagc 17745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 43446074 - 43446011
Alignment:
Q  621 aagctaaa-tagcccacttaaattgaaaccaggaagaatcgaacatcagaccttgaggaggagc 683  Q
    |||||||| ||||||||| ||||||  ||| || |||||||||||| |||||||||||||||||    
T  43446074 aagctaaactagcccactcaaattggcaccggggagaatcgaacatgagaccttgaggaggagc 43446011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 676
Target Start/End: Complemental strand, 23399056 - 23398995
Alignment:
Q  616 tgaagaagctaaat-agcccacttaaattgaaaccaggaagaatcgaacatcagaccttgag 676  Q
    |||||||||||||| | |||||||||||||| |  |||||||||||||| | ||||||||||    
T  23399056 tgaagaagctaaatgaacccacttaaattgacataaggaagaatcgaacttgagaccttgag 23398995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University