View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-3-Insertion-1 (Length: 1159)
Name: NF2911-3-Insertion-1
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-3-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 735; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 8 - 1008
Target Start/End: Original strand, 13923930 - 13924901
Alignment:
| Q |
8 |
tacacaagcctagttaattatgatcaaacattttagggtctgcgtcgtgggtttagaaatgtttataaattatgtaccaatacaaagacacatgatttgg |
107 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13923930 |
tacacaagcctagttaattatgatcaaattttttagggtctgcgt---gggtttagaaatgtttataaattatgtaccaatgcaaagacacatgatttgg |
13924026 |
T |
|
| Q |
108 |
aatttgtatactgccatgtagtatgaatatataaacttttattgttaagatattgagtggtaagtgtttagcaatatgctcccacaactttgcatgattt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
13924027 |
aatttgtatactgccatgtagtatgaatatataaacttttattgttaagatattgagtggtcaatgtttagcaaaatgctcccacaactttgcatgattt |
13924126 |
T |
|
| Q |
208 |
taacctttgatatatgctacattttttgggagcaaattttgttacccaaggttgcgtgattcaacaaaagcaatagagaaggttgttgatttaagcagag |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
13924127 |
taacctttgatatatgctacattttgtgggagcaaattttgttacccaaggttgcttgattcaacaaaagcaatagggaaggttgttgattta------- |
13924219 |
T |
|
| Q |
308 |
ttatctttggcttaatggctgcacctttatcaagttccttactatcattacatcgaccagatcacaattgtgcaactaattttcgtaacatgagttacat |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13924220 |
--------------atggctgcacctttatcaagttccttactatcattacatcgaccagatcacaattgtgcaactaattttcgtaacatgagttacat |
13924305 |
T |
|
| Q |
408 |
gacaaattcaaaatcattgcaacatatatttgacggggtaaatgttgtttttacatcattacatgcataattcttgaaactaaaacaccactgattttgg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13924306 |
gacaaattcaaaatcattgcaacatatatttgacggggtaaatgttgtttttacatcattacatgcataattcttgaaactaaaacaccactgattttgg |
13924405 |
T |
|
| Q |
508 |
tgaaaatgatctggttaaaagcaatcttctgctcaatacccgctgcacatgtcaaaacaaagaggtgatactacactctcatggtagacttctgaaacac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13924406 |
tgaaaatgatctggttaaaagcaatcttctgctcaatacccgctgcacatgtcaaaacaaagaggtgatactacactctcatggtagacttcagaaacac |
13924505 |
T |
|
| Q |
608 |
catagatatgtcatatgttgaagagtcttgagagtaccatctatgggattgtaaacaaccaactcagactgaaattggagaagtactttcccatcctcaa |
707 |
Q |
| |
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| T |
13924506 |
catag-------atatgttgaagagtcttgagagtaccatctatgggattgtaaacaaccaactcagagtgaaattggagaagtactttcccatcctcaa |
13924598 |
T |
|
| Q |
708 |
aaacatacagtaacctttcatnnnnnnnnnnnnnnnnnnnntcttccatgctaggaagacggaacaatttaatccagaattcatcatttccagactcctt |
807 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13924599 |
aaacatacagtaacctttcataaaaacaaaaaccataaggatcttccatgctaggaagacggaacaatttaatccagaattcatcatttccaaactcctt |
13924698 |
T |
|
| Q |
808 |
taaaagccaaacatccgaaaaagtatgagcaaaagcaagagtgcacaagcaattcttgagcacctctaaggttgatttaaccacaaccacctctccgtaa |
907 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
13924699 |
caaaagccaaacatccgaaaaagtattagcaaaagcaagagtgcacaagcaatccttgagcacctctaaggttgatttaatcacaaccacctctccataa |
13924798 |
T |
|
| Q |
908 |
taaggca-aaatagctttctataagattccttctccaaatcaagagaaacaatgacataatctgaatcataacgtgtcagcc-attaacagatccgcata |
1005 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
13924799 |
taaggcatcaatagctttctgtaagattccttctccaaatcaagaggaacaatgacataatctgaaccataacgtgtcagccaattaacagatccgcata |
13924898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 760 - 832
Target Start/End: Original strand, 7160743 - 7160815
Alignment:
| Q |
760 |
aggaagacggaacaatttaatccagaattcatcatttccagactcctttaaaagccaaacatccgaaaaagta |
832 |
Q |
| |
|
||||||||||||||||||| |||| | |||| ||||||| ||||||| | |||||||||||| | ||||||| |
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|
| T |
7160743 |
aggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatctgtaaaagta |
7160815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 916 - 959
Target Start/End: Original strand, 7160903 - 7160946
Alignment:
| Q |
916 |
aatagctttctataagattccttctccaaatcaagagaaacaat |
959 |
Q |
| |
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| T |
7160903 |
aatagctctcgataagactccttctccaaatcaagagaaacaat |
7160946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 931 - 962
Target Start/End: Complemental strand, 33038047 - 33038016
Alignment:
| Q |
931 |
gattccttctccaaatcaagagaaacaatgac |
962 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
33038047 |
gattccttctccaaatcaagagaaacaatgac |
33038016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 934 - 963
Target Start/End: Complemental strand, 33020206 - 33020177
Alignment:
| Q |
934 |
tccttctccaaatcaagagaaacaatgaca |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
33020206 |
tccttctccaaatcaagagaaacaatgaca |
33020177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 934 - 963
Target Start/End: Complemental strand, 33026547 - 33026518
Alignment:
| Q |
934 |
tccttctccaaatcaagagaaacaatgaca |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
33026547 |
tccttctccaaatcaagagaaacaatgaca |
33026518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 6072483 - 6072547
Alignment:
| Q |
234 |
tgggagcaaattttgttacccaaggttgcgtgattcaacaaaagcaatagagaaggttgttgatt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||| |||| | |||||||||||| |
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|
| T |
6072483 |
tgggagcaaattttgttacccaaggttgtttgattcgacaaaactgataggggaggttgttgatt |
6072547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 934 - 963
Target Start/End: Original strand, 7430652 - 7430681
Alignment:
| Q |
934 |
tccttctccaaatcaagagaaacaatgaca |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7430652 |
tccttctccaaatcaagagaaacaatgaca |
7430681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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