View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-3-Insertion-13 (Length: 547)
Name: NF2911-3-Insertion-13
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-3-Insertion-13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 6072883 - 6072530
Alignment:
| Q |
8 |
cctatatgttcctagatcaaagactatttaaggtttatactcgcaacaccaaacaaagtaatacttattccagctagggtttcatagacccctacattca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
6072883 |
cctatatgttcctagatcaaagactatttaaggtttatactcgcgacaccaaacaaagtaatacttattccagctacggttccatagatccctacattca |
6072784 |
T |
|
| Q |
108 |
acattcctcatccaggtgtaggtgggacttataatgtctagagcgtttgagaacattaaacatagtcatacaagaaacaaacttaacaaacttaaaataa |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6072783 |
acattcctcatccagatgtaggtgggacttataatgtcaagagcgtttgagaacattaaacatagtcatacaagtaacaaacttaacaaacttaaaataa |
6072684 |
T |
|
| Q |
208 |
attgatggctcaatttattttctttgatctcttcatggttaagtaaaattaataggtaatcttcatcattgcatcatttgctttgtcatttagctnnnnn |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6072683 |
attgatggctcaatttattttctttgatttcttcatggttaagtaaaattaataggtaatcttcatcattgcatcatttgctttgtcatttagctaaaaa |
6072584 |
T |
|
| Q |
308 |
nntctacgaaattttatggaattacgtgaaagtagcttaactggcatttaggta |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6072583 |
aatctacgaaattttatggaattacgtgaaagtagcttaactggcatttaggta |
6072530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 6054324 - 6054414
Alignment:
| Q |
415 |
acaagttaataagcattgtaaatgaatatgtaaaagaactgaaatttagaacttatctatagcattcaaacattgattctttgcgagtgtc |
505 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
6054324 |
acaagttaacaagtattgtaaatgaatatgtaaaagaaccgaaatttagaacttatcaatagcattcaaatattgattctttgtgagtgtc |
6054414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 6076949 - 6076765
Alignment:
| Q |
13 |
atgttcctagatcaaagactatttaaggtttatactcgcaacaccaaacaaagtaatacttattccagctagggtttcatagacccctacattcaacatt |
112 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||| ||||| |||||| ||| || | ||||||||| |||| ||||||||||||| | ||| ||| |
|
|
| T |
6076949 |
atgttccaagatcaaagagtatttaatgtttatactcgcgacacctaacaaattaagacctgttccagctatggttccatagacccctacgtgcaatatt |
6076850 |
T |
|
| Q |
113 |
cctcatccaggtgtaggtgggacttataatgtctagagcgtttgagaacattaaacatagtcatacaagaaacaaacttaacaaa |
197 |
Q |
| |
|
||| || | | ||| |||||||||| | || ||| ||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
6076849 |
ccttctctaaatatagtagggacttatattctcacgagtgtttgagaacattaagcatagtcatacaaaaagtgaacttaacaaa |
6076765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 6114238 - 6114339
Alignment:
| Q |
12 |
tatgttcctagatcaaagactatttaaggtttatactcgcaacaccaaacaaagtaatacttattccagctagggtttcatagacccctacattcaacat |
111 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| | ||||| |||||||||| || | ||||||||| |||| ||||||||||||||| ||| || |
|
|
| T |
6114238 |
tatgttcctagatcaaaaactatttaatgtttatactcacgacacctaacaaagtaagacatgttccagctacggttccatagacccctacatgcaatat |
6114337 |
T |
|
| Q |
112 |
tc |
113 |
Q |
| |
|
|| |
|
|
| T |
6114338 |
tc |
6114339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 6121128 - 6121296
Alignment:
| Q |
12 |
tatgttcctagatcaaagactatttaaggtttatactcgcaacaccaaacaaagtaatacttattccagctagggtttcatagacccctacattcaacat |
111 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| | | ||| |||||||||| || | ||||||||| |||| ||||||||||||||| ||| || |
|
|
| T |
6121128 |
tatgttcctagatcaaatactatttaatgtttatactcacgagacctaacaaagtaagacatgttccagctacggttccatagacccctacatgcaatat |
6121227 |
T |
|
| Q |
112 |
tcctcatccaggtgtaggtgggacttataatgtctagagcgtttgagaacattaaacatagtcatacaa |
180 |
Q |
| |
|
|| | || | || ||| |||||||||| | || ||| |||| ||||| |||| ||||||||||||| |
|
|
| T |
6121228 |
tcatgctctaagtctagtagggacttatattctcacgagtgtttcagaactttaagcatagtcatacaa |
6121296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 6089205 - 6089100
Alignment:
| Q |
12 |
tatgttcctagatcaaagactatttaaggtttatact--cgcaacaccaaacaaagtaatacttattccagctagggtttc--atagacccctacattca |
107 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| || ||||| |||||||||| || | ||||||||| |||||| |||||||||||||| || |
|
|
| T |
6089205 |
tatgttcctggatcaaagactatttaatgtttatactcacgacacacctaacaaagtaagacatgttccagctacggtttcatatagacccctacatgca |
6089106 |
T |
|
| Q |
108 |
acattc |
113 |
Q |
| |
|
| |||| |
|
|
| T |
6089105 |
atattc |
6089100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 6054137 - 6054178
Alignment:
| Q |
372 |
tatttgcaagatttctaggattttccttgatattacttgtaa |
413 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
6054137 |
tatttgcatgatttctaggatttttcttgatattatttgtaa |
6054178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 35246707 - 35246633
Alignment:
| Q |
397 |
cttgatattacttgtaaaacaagttaataagcattgtaaatgaatatgtaaaagaactgaaatttagaacttatc |
471 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| |||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
35246707 |
cttgatattacttgaaaagcaaattaataagtgttgtaaataaatatgtaaaataactgaaatttaacacttatc |
35246633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 31100283 - 31100360
Alignment:
| Q |
372 |
tatttgcaagatttctaggattttccttgatattacttgtaaaacaagttaataagcattgtaaatgaatatgtaaaa |
449 |
Q |
| |
|
|||||||| ||||| || |||||| | ||||||||||||||||||||||||||||| |||| ||| | ||||||||| |
|
|
| T |
31100283 |
tatttgcatgatttatatgatttttcatgatattacttgtaaaacaagttaataagtgttgtgaataagtatgtaaaa |
31100360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 10166750 - 10166698
Alignment:
| Q |
397 |
cttgatattacttgtaaaacaagttaataagcattgtaaatgaatatgtaaaa |
449 |
Q |
| |
|
|||||||||||||||||||||||||||| | || || ||| ||||||||||| |
|
|
| T |
10166750 |
cttgatattacttgtaaaacaagttaatgcgtatcgtgaataaatatgtaaaa |
10166698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University