View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-3-Insertion-14 (Length: 487)
Name: NF2911-3-Insertion-14
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-3-Insertion-14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 197 - 487
Target Start/End: Original strand, 45209199 - 45209501
Alignment:
| Q |
197 |
tatgaattaattaactaaatttgaannnnnnnagggtaatttg----ttaagtaatattaaggag---------aggatgatgaagagaacatatatcat |
283 |
Q |
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| T |
45209199 |
tatgaattaattaactaaatttgaatttttttagggtaatttgataattaagtaatattaaggaggaaaagacgaagatgatgaagagagcatatatcat |
45209298 |
T |
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| Q |
284 |
gtcatgacaagtagtattttgtaaatttaatgtcgtcgataggcaagttatagggactgtagctataagagttttacaaatttactacacctgccttgcc |
383 |
Q |
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| T |
45209299 |
atcatgacaagtagtattttgtaaatttaatgtcgtcgataggcaagttatagg-actgtagctataagagttttacaaatttactacacctgccttgcc |
45209397 |
T |
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| Q |
384 |
tctgacaatttatgtaattcttctttctacaaatatgtttttcataatgctgacttataaacaagatgttttctcaattgacaatttttcatgaatacat |
483 |
Q |
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| T |
45209398 |
tctgacaatttatgtaattcttctttttacaaatatgtttctcataatgctgacttataaacaagatgttttctcaattgacaatttttcatgaatatat |
45209497 |
T |
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| Q |
484 |
tttt |
487 |
Q |
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|||| |
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| T |
45209498 |
tttt |
45209501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 45208182 - 45208324
Alignment:
| Q |
7 |
attatcgagtttcatgtgcaatttgcatgctttggaagatcaaacatgtaaaaatatatgatgaacttgctgttatgattaaatttcccaatttgagaag |
106 |
Q |
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| T |
45208182 |
attatcgagtttcatgtgcaatt-gcatgctttggaagatcaaacatgtaaaaatatatgatgaacttgctgttatgattaaatttcccaatttgagaag |
45208280 |
T |
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| Q |
107 |
tgacagtaacaataatatatatcttctctgcatgaaccgtctaa |
150 |
Q |
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| T |
45208281 |
tgacagtaacaataatatatatcttctctgcatgaaccgtctaa |
45208324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 42084051 - 42084164
Alignment:
| Q |
7 |
attatcgagtttcatgtgcaatttgcatgctttggaagatcaaacatgtaaaaatatatgatgaacttgctgttatgattaaatttcccaatttgagaag |
106 |
Q |
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| T |
42084051 |
attatccagtttcatgtacaatt-gcatgctttggaagatcaaacatgtaaaaatatatgatgaacttgctgttatgattaaatttcccaa-ttgagaag |
42084148 |
T |
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| Q |
107 |
tgacagtaacaataat |
122 |
Q |
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| T |
42084149 |
tgacattaacaataat |
42084164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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