View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-3-Insertion-3 (Length: 1005)

Name: NF2911-3-Insertion-3
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-3-Insertion-3
NF2911-3-Insertion-3
[»] chr1 (5 HSPs)
chr1 (7-1001)||(46015981-46016972)
chr1 (204-349)||(8019020-8019163)
chr1 (126-175)||(4601547-4601597)
chr1 (126-175)||(21098905-21098955)
chr1 (146-191)||(8018951-8018996)
[»] chr6 (3 HSPs)
chr6 (109-209)||(8006979-8007079)
chr6 (203-328)||(27772459-27772585)
chr6 (126-174)||(14184604-14184653)
[»] chr4 (1 HSPs)
chr4 (147-261)||(50151766-50151890)
[»] chr8 (2 HSPs)
chr8 (126-175)||(14666899-14666949)
chr8 (126-174)||(4565454-4565503)
[»] chr5 (3 HSPs)
chr5 (151-209)||(8778892-8778950)
chr5 (204-271)||(26994557-26994625)
chr5 (126-175)||(26348139-26348189)
[»] chr7 (2 HSPs)
chr7 (125-175)||(5925535-5925586)
chr7 (126-174)||(17149943-17149991)
[»] scaffold0205 (1 HSPs)
scaffold0205 (126-175)||(10975-11025)
[»] chr2 (3 HSPs)
chr2 (123-175)||(20120325-20120378)
chr2 (231-273)||(23257880-23257922)
chr2 (126-175)||(29710999-29711049)
[»] scaffold0022 (1 HSPs)
scaffold0022 (127-175)||(69284-69333)


Alignment Details
Target: chr1 (Bit Score: 903; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 7 - 1001
Target Start/End: Original strand, 46015981 - 46016972
Alignment:
Q  7 aaaaagaaaaccaaccatttcatggggatagtaataccgtctgatctgtccggtgaggatggatggtaacaatggtaacggtacgtacggtgctctgatg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||    
T  46015981 aaaaagaaaaccaaccatttcatggggatagtaataccgtctgatctgtccgctgaggatggatggtaacaatggtaacggtac----ggtgctctgatg 46016076  T
Q  107 tggtggcgatgcaatctcacggtggaacaaaaggtgttgcaggcacgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaagaaa 206  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  46016077 tggtggcgatgcaatctcacggtggaacgaaaggtgttgcaggcacgttagcactccgacgatcaaatcagtatgagaaatgagaggagtgtgtaagaaa 46016176  T
Q  207 gtgagtcataccttatgggggaagcaaggtcacccttatataagcgtgagtgagagtaaccgtctccatgtgatgtggcgcctcatcagaaggccgttga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  46016177 gtgagtcataccttatgggggaagcaaggtcacccttatataagcgtgcgtgagagtaactgtctccatgtgatgtggcgcctcatcaggaggccgttga 46016276  T
Q  307 gagacatgtgtacgatgcttgacgtacgggggcgtgctccagtaaggtaggcgtaccgttagttagcatagtcttttaggcatttagtccacatgtcttc 406  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46016277 cagacatgtgtacggtgcttgacgtacgggggcgtgctccagtaaggtaggcgtaccattagttagcatagtcttttaggcatttagtccacatgtcttc 46016376  T
Q  407 gtaggattgaccatctggccagtccggaacaccttcattgttaatttgttactgtaatctctaccaaaattacaaaaatatatttgaatgtatcttttat 506  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46016377 gtaggattgaccatctgaccggtccagaacaccttcattgttaatttgttactgtaatctctaccaaaattacaagaatatatttgaatgtatcttttat 46016476  T
Q  507 ttatcatttcatcatcaaatgtatttttcattagttaatttaatcatctaatgtgttttattttgtcaatttagccaataaactacctgcagaagaaaca 606  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016477 ttgtcatttcatcatcaaatgtatttttcattagttaatttaatcatctaatgtgttttattttgtcaatttagccaataaactacctgcagaagaaaca 46016576  T
Q  607 cttaatgccatatttaaaattttgttacattatgatgctataataacaaaggactgaaatgtttgtttacattttgatattgaagtttcaccatctctct 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46016577 cttaatgccatatttaaaattttgttacattatgatgctataataacaaaggactgaaatgtttgtttacatttcgatattgaagtttcaccatctctct 46016676  T
Q  707 tacttcataactcaagtacatgaaacaacttttatttttcttttgaaatatacatgagaagaatctctttaatgcggcataaattcatcaagtcttgtgc 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46016677 tacttcataactcaagtacatgaaacaacttttatttttcttttgaaatatacatgagaagaatctctttaatgcggcattaattcatcaagtcttgtgc 46016776  T
Q  807 taccaaaccactctcaaggagtgtacaaattgtgta-cctatgaaacaacttttcctaatttctaacaggtgacactgtttaacatgtacaatcaaataa 905  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016777 taccaaaccactctcaaggagtgtacaaattgtgtaccctatgaaacaacttttcctaatttctaacaggtgacactgtttaacatgtacaatcaaataa 46016876  T
Q  906 ctactctttctaaatctctgctattataaagtaagggtattatggttacaggtgcagtctgatacttgagtcacttagatttaatacagtacttgg 1001  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016877 ctactctttctaaatctctgctattataaagtaagggtattatggttacaggtgcagtctgatacttgagtcacttagatttaatacagtacttgg 46016972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 204 - 349
Target Start/End: Original strand, 8019020 - 8019163
Alignment:
Q  204 aaagtgagtcataccttatgggggaagcaaggtcacccttatataagcgtgagtgagagtaaccgtctccatgtgatgtggcgcctcatcagaaggccgt 303  Q
    ||||||| |||||||||  ||| ||||| | |||||||||||||| ||||| |||||| |||||||||||  |||||| ||||||||||||  ||| |||    
T  8019020 aaagtgaatcataccttgggggtgaagctatgtcacccttatataggcgtgtgtgagaataaccgtctcc--gtgatgcggcgcctcatcaagaggtcgt 8019117  T
Q  304 tgagagacatgtgtacgatgcttgacgtacgggggcgtgctccagt 349  Q
    |||  |||| ||||||| ||| ||| ||||| ||||||||||||||    
T  8019118 tgaaggacacgtgtacggtgcctgatgtacgtgggcgtgctccagt 8019163  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 4601597 - 4601547
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||    
T  4601597 cggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtc 4601547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 21098955 - 21098905
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    ||||||||| |||||||  ||||||||| ||||||||||||||||||||||    
T  21098955 cggtggaacgaaaggtggctgcaggcacattagcactccgacgatcaagtc 21098905  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 8018951 - 8018996
Alignment:
Q  146 caggcacgttagcactccgacgatcaagtcggtatgagaaatgaga 191  Q
    |||||||||||||||| ||||| ||||||| ||||| |||||||||    
T  8018951 caggcacgttagcactacgacgctcaagtcagtatgggaaatgaga 8018996  T

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Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 8007079 - 8006979
Alignment:
Q  109 gtggcgatgcaatctcacggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaagaaag 207  Q
    ||||||||||||||||| ||||| || |||||||  ||||||| ||||||||||  ||||||||||||  |||||||||||||| || ||||||||||||    
T  8007079 gtggcgatgcaatctcatggtgggacgaaaggtgcctgcaggctcgttagcactttgacgatcaagtcaatatgagaaatgaga-gaatgtgtaagaaag 8006981  T
Q  208 tg 209  Q
    ||    
T  8006980 tg 8006979  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 27772585 - 27772459
Alignment:
Q  203 gaaagtgagtcataccttatgggggaagcaaggtcacccttatataagc--gtgagtgagagtaaccgtctccatgtgatgtggcgcctcatcagaaggc 300  Q
    |||||||| |||||||||   || |||||||||||||||||||||| ||  ||| ||| |||||||||||||  ||||||||||||||| |||||  | |    
T  27772585 gaaagtgaatcataccttgaaggtgaagcaaggtcacccttatataggcacgtgtgtg-gagtaaccgtctctgtgtgatgtggcgccttatcaggggtc 27772487  T
Q  301 cgttgagagacatgtgtacgatgcttga 328  Q
     |||||| |||| ||||||| |||||||    
T  27772486 tgttgagggacacgtgtacggtgcttga 27772459  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 14184653 - 14184604
Alignment:
Q  126 cggtggaacaaaaggtg-ttgcaggcacgttagcactccgacgatcaagt 174  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||    
T  14184653 cggtggaacgaaaggtgattgcaggcacattagcactccgacgatcaagt 14184604  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 50151890 - 50151766
Alignment:
Q  147 aggcacgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaa----------gaaagtgagtcataccttatgggggaagcaaggt 236  Q
    |||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||          |||||| | |||||||||  ||| ||||||| ||    
T  50151890 aggcacgtcagcactccgacgatcatgtcagtataagaaatgagaggagtgtgtaaggaagcgtgggaaagtaaatcataccttgagggtgaagcaaagt 50151791  T
Q  237 cacccttatataagcgtgagtgaga 261  Q
    |||||||||||| ||||| ||||||    
T  50151790 cacccttatataggcgtgcgtgaga 50151766  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 14666949 - 14666899
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14666949 cggtggaacaaaaggtgcctgcaggcacgttagcactccgacgatcaagtc 14666899  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 4565503 - 4565454
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagt 174  Q
    ||||||||| |||||||| |||||||| |||||||||||||| |||||||    
T  4565503 cggtggaacgaaaggtgtctgcaggcatgttagcactccgacaatcaagt 4565454  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 8778892 - 8778950
Alignment:
Q  151 acgttagcactccgacgatcaagtcggtatgagaaatgagaggagtgtgtaagaaagtg 209  Q
    |||||||| ||| ||||||||| || |||||||||||||||| ||||||||||||||||    
T  8778892 acgttagcgctctgacgatcaaatcagtatgagaaatgagagaagtgtgtaagaaagtg 8778950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 26994625 - 26994557
Alignment:
Q  204 aaagtgagtcataccttatgggggaagcaaggtcacccttatataagcgtgag-tgagagtaaccgtct 271  Q
    ||||||| |||||||||  ||| |||||||||||||||||||||| ||| | | |||||||||||||||    
T  26994625 aaagtgaatcataccttgggggtgaagcaaggtcacccttatataggcgcgcgttgagagtaaccgtct 26994557  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 26348189 - 26348139
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| |||||||    
T  26348189 cggtggaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtc 26348139  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 5925586 - 5925535
Alignment:
Q  125 acggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  5925586 acggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtc 5925535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 17149943 - 17149991
Alignment:
Q  126 cggtggaacaaaaggtgttgcaggcacgttagcactccgacgatcaagt 174  Q
    |||||| || ||||||| |||| ||||||||||||||||||||||||||    
T  17149943 cggtggcacgaaaggtgctgcatgcacgttagcactccgacgatcaagt 17149991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 11025 - 10975
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||||||    
T  11025 cggtggaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtc 10975  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 20120325 - 20120378
Alignment:
Q  123 tcacggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    |||||||||||| |||||||| |||||||||||||||||||||||  |||||||    
T  20120325 tcacggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtc 20120378  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 23257880 - 23257922
Alignment:
Q  231 caaggtcacccttatataagcgtgagtgagagtaaccgtctcc 273  Q
    |||||||||||||||||| ||||| |||||| |||||||||||    
T  23257880 caaggtcacccttatataggcgtgtgtgagaataaccgtctcc 23257922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 29710999 - 29711049
Alignment:
Q  126 cggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    |||||||||||||||||| |||| ||||||||||||||| ||| |||||||    
T  29710999 cggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtc 29711049  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 69333 - 69284
Alignment:
Q  127 ggtggaacaaaaggtgt-tgcaggcacgttagcactccgacgatcaagtc 175  Q
    ||||||||||||||||  |||||||||||||||||||| ||| |||||||    
T  69333 ggtggaacaaaaggtgcctgcaggcacgttagcactccaacgctcaagtc 69284  T

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