View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-3-Insertion-4 (Length: 1002)
Name: NF2911-3-Insertion-4
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-3-Insertion-4 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 852; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 8 - 1002
Target Start/End: Complemental strand, 37565712 - 37564737
Alignment:
| Q |
8 |
tacaatactgtcaatgagaggtacatggggatgaaactaaggagtggttgcaacgagaagatccaaaaacattttggagtctgactcaataaccaccgtc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37565712 |
tacaatactgtcaatgagaggtacatggggatgaaactaaggagtggttgcaacgagaagatccaaaaacattttggagtcggactcaataaccaccgtc |
37565613 |
T |
|
| Q |
108 |
ttgtaactcttgtcccaagttgttgataaccagtcttggctgagtacactgcatctgcactagcattctaaatcaaaacatcggtacaagagttatacat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
37565612 |
ttgtaactcttgtcccaagttgttgataaccagtctttgctgagtacactgcatctgcactagcattctaaatcaaaatatcgatacaagagttatacat |
37565513 |
T |
|
| Q |
208 |
aaaatgctccaaatcaaaactagttgttgatgtctacataaccaagctcaagtatagtatttgggctagttggaacatagaattcagtgataatgctcca |
307 |
Q |
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| T |
37565512 |
aaaatgctccaaatcaaaactagttgttgatgtctacataaccaagctcaagtatagtatttgggctagttggaacatagaatttagtgataatgctcca |
37565413 |
T |
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| Q |
308 |
gcaacannnnnnngagagatgtaggtaaggggagttgatggaggttccattcccacatgcatatttacaaattcaatactgtcaacaactatttacatgc |
407 |
Q |
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| T |
37565412 |
gcaacatttttttgagagatgtaggtaaggggagttgatggaggttccattcccacatacatatttacaaattaaatactgtcaacaactat-------- |
37565321 |
T |
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| Q |
408 |
taaataacacgggatcataatgaatgccataaagattgaaaattttctactatggttcaaaatggtggtcaatggataaactatgacacaggcagacact |
507 |
Q |
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| T |
37565320 |
-----------ggttcaaaatgaatgccataaagattgaaaattttctactatggttcaaaatggtggtcaatggataaactatgacacaggcagacact |
37565232 |
T |
|
| Q |
508 |
aaaatagagaaaataaatgtaataataccataaagattgtaaattgttccccataatgtattgcataaaattgctgaaacagtgatggaggctatgagaa |
607 |
Q |
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| T |
37565231 |
aaaatagagaaaataaatgtaataataccataaagattgtaaattgttccccataatgtattgcataaaattgctgaaacagtgatggaggctatgagaa |
37565132 |
T |
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| Q |
608 |
agatggaaatggttgctgttatggtcaggtcctgaccaatgagcattgatgaatcactttccatagtatggaaatgtcttaagacagtaaaggctcaaat |
707 |
Q |
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| T |
37565131 |
agatggaaatggttgctgatatggtcaggtcctgacaaatgagcattgatgaatcactttccatagtatggcaatgtcttaagacagtaaaggctcaaat |
37565032 |
T |
|
| Q |
708 |
ctgttaagagtctggcttattctaaacagtgatgtgctttttgtgaggaattttttattgttgcaaaattgatgcactaggaagtttaagttagacaatt |
807 |
Q |
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| T |
37565031 |
ctgttaagagtctggcttattctaaacagtgatgtgctttttgtgaggaattttttattgttgcaaaattgatgcactaggaggtttaagttagacaatt |
37564932 |
T |
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| Q |
808 |
gacatgagagacatggttgacttgtagttgttattgtggatctcagttatggttaaggaacttgatcaaaacacatgccaacaatggcttcaataaatgt |
907 |
Q |
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| T |
37564931 |
gacatgagagacatggttgacttgtagttgttattgtggatctcagttatggttaaggaacttgatcaaaacacatgccaacaatggcttcaataaatat |
37564832 |
T |
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| Q |
908 |
cttcaggttgcttcaatagactggtttacctgcttctgttggaggaaattagcagtatctctttaacttgtacatacataaacctttgttgctta |
1002 |
Q |
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| T |
37564831 |
cttcaggttgcttcaatagactggtttacctgcttctgttggaggaaattagcagtatctctttaacttgtacatacataaacatttgttgctta |
37564737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 172 - 410
Target Start/End: Original strand, 37161416 - 37161661
Alignment:
| Q |
172 |
attctaaatcaaaacatcggtacaagagttatacataaaa-tgctccaaatcaaaactagttgttgatgtctacataaccaagctcaagtatagtatttg |
270 |
Q |
| |
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|||| |||||||| |||| |||||||| | || ||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||| |
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| T |
37161416 |
attccaaatcaaagcatcagtacaagattcatccataaaaatgctccaaatcaaaactaattgctgatgtctacataaccaagctctggtataatatttg |
37161515 |
T |
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| Q |
271 |
ggctagttg-------gaacatagaattcagtgataatgctccagcaacannnnnnngagagatgtaggtaaggggagttgatggaggttccattcccac |
363 |
Q |
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| T |
37161516 |
ggctagttggaactttgaacataggattcgatgttaatgctctatcaaca--tttttgagagatgtaggtaaagggagttgatggagttttcattcccac |
37161613 |
T |
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| Q |
364 |
atgca-tatttacaaattcaatactgtcaacaactatttacatgctaa |
410 |
Q |
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| T |
37161614 |
ttacattatttacaaattcagtgctgtcaacaactatttacgtgctaa |
37161661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 172 - 363
Target Start/End: Original strand, 37205982 - 37206179
Alignment:
| Q |
172 |
attctaaatcaaaacatcggtacaagagttatacataaaa-tgctccaaatcaaaactagttgttgatgtctacataaccaagctcaagtatagtatttg |
270 |
Q |
| |
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|||| |||||||| |||| |||||||| | || ||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||| |
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| T |
37205982 |
attccaaatcaaagcatcagtacaagattcatccataaaaatgctccaaatcaaaactaattgctgatgtctacataaccaagctctggtataatatttg |
37206081 |
T |
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| Q |
271 |
ggctagttg-------gaacatagaattcagtgataatgctccagcaacannnnnnngagagatgtaggtaaggggagttgatggaggttccattcccac |
363 |
Q |
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| T |
37206082 |
ggctagttggaactttgaacataggattcgatgttaatgctctatcaaca--tttttgagagatgtaggtaaggggagttgatggagttttcattcccac |
37206179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 518 - 695
Target Start/End: Original strand, 37161803 - 37161973
Alignment:
| Q |
518 |
aaataaatgtaataataccataaagattgtaaattgttccccataatgtattgcataaaattgctgaaacagtgatggaggctatgagaaagatggaaat |
617 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||| |||| ||| ||||| || ||||||||||| |
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| T |
37161803 |
aaataaatgcaataataccataaagattgtaaatttctccccataatgtattacgtagaattgctgaaatggtgaaggatgctataagcaagatggaaat |
37161902 |
T |
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| Q |
618 |
ggttgctgttatggtcaggtcctgaccaatgagcattgatgaatcactttccatagtatggaaatgtcttaagacagt |
695 |
Q |
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| T |
37161903 |
ggtt----atatgctcatgtccagtccaatgagca---atcattcattttccatagtatggcaatgtcttaaaacagt |
37161973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 832 - 988
Target Start/End: Original strand, 37162185 - 37162330
Alignment:
| Q |
832 |
tagttgttattgtggatctcagttatggttaaggaacttgatcaaaacacatgccaacaatggcttcaataaatgtcttcaggttgcttcaatagactgg |
931 |
Q |
| |
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||||| ||||| ||||| ||||| |||| |||||||||||| ||||||| ||||| |||||||||||||||| |||| ||| ||||||||| |
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| T |
37162185 |
tagtttttattatggatatcagtcatggataaggaacttgaatgaaacacaggccaa---tggcttcaataaatgtgttcaagttacttcaatag----- |
37162276 |
T |
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| Q |
932 |
tttacctgcttctgttggaggaaattagcagtatctctttaacttgtacatacataa |
988 |
Q |
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| T |
37162277 |
---acctgcttctgttaagggaaaatagcagtatctctttaacttgcaaatacataa |
37162330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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