View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-3-Insertion-8 (Length: 679)
Name: NF2911-3-Insertion-8
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-3-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 269 - 663
Target Start/End: Complemental strand, 32815470 - 32815076
Alignment:
| Q |
269 |
ttcaatgtttgtacttctagttaatgacactaaacgaagtcttaataaatgttgtaaagtgaattctgttgctttaggtggttgaaattggcaaaggaag |
368 |
Q |
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| T |
32815470 |
ttcaatgtttgtacttctagttaatgcaactaaacgaagtcttaataaatggtgtaaagtgaattctgttgttgtaggtggttgaaattggcaaaggaag |
32815371 |
T |
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| Q |
369 |
caaggttaaatatgaactggataagaaaagcggacttattaaggtatcattaatttcctctgattccgaaaatatcgttgattcgatgggaaaatataaa |
468 |
Q |
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| T |
32815370 |
caaggttaaatatgaactggacaagaaaagcggacttattaaggtatcattaatttcatctgattccgaaaatatggttgattcgatgggaaaatataaa |
32815271 |
T |
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| Q |
469 |
ggctgtttcttttaagggaatcatataataatttacaatttctacaattctgccaaattaattgtgaagacttattttcctttgcaagcaccagatttta |
568 |
Q |
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| T |
32815270 |
ggctgtttcttttaagggaatcatataataatttacaatttctacaattctgccaaattaattgtgaagacttattttcctttgcaagcaccagatttta |
32815171 |
T |
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| Q |
569 |
catgtctacgtttttacaagtaagattgacaacgtctaatgtttacgttgcaacgtcgcccgatctatagtatacacagatagaacttccaaaga |
663 |
Q |
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| T |
32815170 |
catgtctaagtttttacgagtaagattgataatgtttaatgtttaggttgcaaagtggtttgatttatagtatagacagatagaagttcaaaaga |
32815076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 32815697 - 32815533
Alignment:
| Q |
8 |
ccagttgttgcgtggtatgaaatc-tactttcttcccagggggataagaaagatgctgttgcccctccatggcatgacttagagattggcattattatta |
106 |
Q |
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| T |
32815697 |
ccagttgttgcgttgaatgaaagaatactttcttccatggctgataagaaagatgctgctgctcatccatggcatgacttagagattggtattattatta |
32815598 |
T |
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| Q |
107 |
actaattcttttttacgtttctttaatcatccttctgcttccacaatctctccgtacttttaaca |
171 |
Q |
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| T |
32815597 |
actaactcttttttacgtttctttattcttctttctgcttcaacaatctctctgtacttttaaca |
32815533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 29368037 - 29368109
Alignment:
| Q |
341 |
tttaggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggt |
413 |
Q |
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| T |
29368037 |
tttaggtggttgaaattggaaaaggaaacaaggtgaaatatgaacttgacaagaaaactggacttattaaggt |
29368109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 43547795 - 43547867
Alignment:
| Q |
341 |
tttaggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggt |
413 |
Q |
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| T |
43547795 |
tttaggtgattgaaattgggaaaggaaacaaggtcaaatatgaacttgacaaaaaaactggacttattaaggt |
43547867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 7985560 - 7985635
Alignment:
| Q |
344 |
aggtggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggtatcatt |
419 |
Q |
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| T |
7985560 |
aggtgattgaaattggcaaaggaagcaaggttaagtatgagttggacaagacaagtggacttataaaggtgtcatt |
7985635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 11775988 - 11775918
Alignment:
| Q |
347 |
tggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggtatca |
417 |
Q |
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| T |
11775988 |
tggttgaaattggcaaaggaagcaatgttaagtaataactggacaagaaaagtagacttcttaaagtatca |
11775918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 3091263 - 3091193
Alignment:
| Q |
347 |
tggttgaaattggcaaaggaagcaaggttaaatatgaactggataagaaaagcggacttattaaggtatca |
417 |
Q |
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| T |
3091263 |
tggttgaaattggcaaaggaagcaaaattaagtaataacgggacaagaaaagtggacttattaaagtatca |
3091193 |
T |
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