View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-3-Insertion-9 (Length: 669)
Name: NF2911-3-Insertion-9
Description: NF2911-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-3-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 78 - 504
Target Start/End: Complemental strand, 28343251 - 28342815
Alignment:
| Q |
78 |
atttactcataaaatcaagaagtaatgatagtaacaatcaaaattggatttactcgtgtagcataagttgtcttgcgttttaaaacgccgtcggggcaat |
177 |
Q |
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| T |
28343251 |
atttgctcataaaatcaagaagtaatgatagtaacaatcaaaattggatttactcgtgtagcataagttgtcttgcgttttaaaacgccgtcggggcaat |
28343152 |
T |
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| Q |
178 |
taagggactatctagcaacacggtttttacttaattatgtaggttggttatatgctttatttgtgaataacatgctatgttgaattgtgtatccaaatgg |
277 |
Q |
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| T |
28343151 |
taagggactatctagcaacatggtttttacttaattatgtaggttggttatatgttttatttgtgaataacatgctatgttgaattgtgtatccaaatgg |
28343052 |
T |
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| Q |
278 |
gggttatgttctttcaatgtgatttgtgtatatgttgaaatcaatatatgaactacttattgatcatgatgataatgcctactttcatgaatgatttgga |
377 |
Q |
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| T |
28343051 |
gggttatgttctttcaatgtgatttgtgtatatgttgaaatgaatatatgaactacttattgatcatgatgataatgcctacttttatgtatgatttgga |
28342952 |
T |
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| Q |
378 |
taaacatatgaaccacgtttggattatgatttttattatatatgctggattaatatgtaaattgttgcattagtgtaaatggagtat----------tca |
467 |
Q |
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| T |
28342951 |
taaacatatgaaccacgtttggattatgatttttattatatatgctggattaatatgtaaattgttgcattagcgtaaatggagtataatacacttatca |
28342852 |
T |
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| Q |
468 |
attttatagtaaaggtgttggtctgtaagagattaca |
504 |
Q |
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| T |
28342851 |
attttatagtaaaggtgttggtctgtaagagattaca |
28342815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 481 - 657
Target Start/End: Complemental strand, 28342810 - 28342634
Alignment:
| Q |
481 |
ggtgttggtctgtaagagattacactgttgtgttgaaccgtgagagattgcaattatgtattttggttcacaagagaatacacattatagaatgagttat |
580 |
Q |
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| T |
28342810 |
ggtgttggtcggtaagagattacactgttgtgttgatccgtgagagattgcaattatgtattttggttcataagataatacacactatagaaggagttat |
28342711 |
T |
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| Q |
581 |
cctacaaccctctgcgttttcctcgctcttcannnnnnnnaccatcttcttggtaaattatcatcttcttgacttaa |
657 |
Q |
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| T |
28342710 |
cctacaaccctctgcgttttcttcgctcttcattttttttaccatcttcttggtaaattatcatcttcttgacttaa |
28342634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 28343335 - 28343302
Alignment:
| Q |
7 |
ataaaacactgaaacggttatatcctaattactc |
40 |
Q |
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| T |
28343335 |
ataaaacactgaaacggttatattctaattactc |
28343302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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