View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-6-Insertion-1 (Length: 1146)
Name: NF2911-6-Insertion-1
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 1024; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1024; E-Value: 0
Query Start/End: Original strand, 11 - 1105
Target Start/End: Complemental strand, 51501712 - 51500613
Alignment:
| Q |
11 |
caacctatttattcatgtttgtgtatgtgaccatgagtgcagggctgaagtggcttgccgcaaaggtgtcgattgtatacaaacgatgccggcggaagat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51501712 |
caacctatttattcatgtttgtgtatgtgactatgagtgcagggctgaagtggcttgccgcaaaggtgtcgattgtatacaaatgatgccggcggaagat |
51501613 |
T |
|
| Q |
111 |
ggcttaaggaagaagcaactggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctaatgccatcgacttaggaattaa |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51501612 |
ggcttaaggaagaagcaaccggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctaatgccatcgacttaggaattaa |
51501513 |
T |
|
| Q |
211 |
accgttcaaattgttccgcgacaaatcaaggttaatgaaatatgaagtttcgctaaacacgtccggtataggtccccttaaagcgtttctacttaaatcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51501512 |
accgttcaaattgttccgcgacaaatcaaggttaatgaaatatgaagtttcgctaaacacgtccggtataggtccccttaaagcgtttctacttaaatcc |
51501413 |
T |
|
| Q |
311 |
aaatgactcattctagaagccaacaaagttcttgggatcctcccagtcaatttgttatacttcaggttcaacgagtccaagaccggcatttgtcctagcg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51501412 |
aaatgactcattctagaagccaacaaagtccttgggatcctcccagtcaatttgttatacttcaggttcaacgagtccaagaccggcatttgtcctagcg |
51501313 |
T |
|
| Q |
411 |
aaaaaggaattggaccagataatcggttcaacgacaagtccaagtctgctagcccataaatatttgaaatggaccgtggaattcgaccattaatccggtt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51501312 |
aaaaaggaattggaccagataatcggttcaacgataagtccaagtctgctagcccataaatatttgaaatggaccgtggaattcgaccgttaatccggtt |
51501213 |
T |
|
| Q |
511 |
gtgactcagaaatgctcggttcagctttttgagttggccgatgttcccaggaatggggcctccaatggcgttgttacggagatcaagttgcattaagttg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51501212 |
gtgactcagaaatgctcggttcagctttttgagttggccgatgttcccaggaatggggcctccaatggcgttgttacggagatcaagttgcattaagttg |
51501113 |
T |
|
| Q |
611 |
aagaggtttacaagcgttgttggaatccttcctgagatatgattgtctgcaaggttgagcaccataagctgagtaagacgccctatatcatatggaatct |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51501112 |
aagaggtttacaagcgttgttggaatccttcctgagatatgattgtctgcaaggttgagcaccataagctgagtaagacgccctatatcatatggaatct |
51501013 |
T |
|
| Q |
711 |
ttccggaaataagacttccggagagatctatgatttggagaaaattgagagttgtgatgcatcca-gggatattccccgaaatgcccttccagtcggaga |
809 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51501012 |
ttccggaaataagacttccggagagatctatgatttggagaaaattgagagttgtgatgcatccaggggatattccccgaaatgcccttccagtcggaga |
51500913 |
T |
|
| Q |
810 |
cggtaatgctagagagccgtgttaggttgcaaattgatggggagatgtgtccggtcatgtatccatttttcgtggttttggtatatttgtagcggcgatg |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51500912 |
cggtaatgctagagagccgtgttaggttgcaaattgatggggagatgtgtccggtcatgtatccatttttcgtggttttggtatatttgtagcggcgatg |
51500813 |
T |
|
| Q |
910 |
gttgtcaccaacagtgaggccgcggagtgtgatttctgcgacacgatgtgtggtagggtcgcaactgattccgtaccaaccgtagcagcagttggtactt |
1009 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
51500812 |
gttgtcaccaacagtgaggccgcggagtgtgatttctgcgacacgatgtgtggtagggtcgcaactgattccgtaccaaccgtagcaacagttggtacct |
51500713 |
T |
|
| Q |
1010 |
ct-catgaatggaggattccaaagttaggttcgttgagagctgctttg-aagacatgagtgatgcccattcag-agtagggcatgactca-taagagctt |
1105 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
51500712 |
ctccatgaatggaagattccaaagttaggttcgttgagagctgctttgaaagacatgagtgatgcccattcagaagtagggcatgactcagtaagagctt |
51500613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 13 - 1081
Target Start/End: Original strand, 24765883 - 24766949
Alignment:
| Q |
13 |
acctatttattcatgtttgtgtatgtgaccatgagtgcagggctgaagtggcttgccgcaaaggtgtcgattgtatacaaacgatgccggcggaagatgg |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
24765883 |
acctatttattcatgtttatgtatgtgaccttgagtgcagggctgaagtggcttgccgcaaaggtgtcgattgtatgcaaacgatgcgggctgaagatgg |
24765982 |
T |
|
| Q |
113 |
cttaaggaagaagcaactggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctaatgccatcgacttaggaattaaac |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
24765983 |
cttaaggaagaagcaatcggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctattgccatagaattaggaattaaac |
24766082 |
T |
|
| Q |
213 |
cgttcaaattgttccgcgacaaatcaaggttaatgaaatatgaagtttcgctaaacacgtccggtataggtccccttaaagcgtttctacttaaatccaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
24766083 |
cgttcaaattgttccgcgacaaatcaaggttgatgaaatatgaagtttcactaaacacgtctggtataggaccccttaaagcatttctacttaaatctaa |
24766182 |
T |
|
| Q |
313 |
atgactcattctagaagccaacaaagttcttgggatcctcccagtcaatttgttatacttcaggttcaacgagtccaagaccggcatttgtcctagcgaa |
412 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||| |
|
|
| T |
24766183 |
atggctcattctagaagccaacaaagtacttgggatccttcctgtcaatttgttatacttcaggttcagcgagtccatgactgacatttgtcctagcgaa |
24766282 |
T |
|
| Q |
413 |
aaaggaattggaccagataatcggttcaacgacaagtccaagtctgctagcccataaatatttgaaatggaccgtggaattcgaccattaatccggttgt |
512 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24766283 |
aaaggaattggaccggataattggttcaaggacaagtccaagtctgctaacccataaatatttgaaatggaccgtggaattcgaccgttaatccggttgt |
24766382 |
T |
|
| Q |
513 |
gactcagaaatgctcggttcagctttttgagttggccgatgttcccaggaatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaa |
612 |
Q |
| |
|
|||| || || || |||||||||||||||||| |||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
24766383 |
gacttagtaacgcccggttcagctttttgagtcggccaatgttcccaggaatagggcctccaatagcattgttgtggagatcaagttgcattaagttgaa |
24766482 |
T |
|
| Q |
613 |
gaggtttacaagcgttgttggaatccttcctgagatatgattgtctgcaaggttgagcaccataagctgagtaagacgccctatatcatatggaatcttt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24766483 |
gaggtttacaagcgttgttggaatccttccagagatatgattgtctgcaaggttgagcaccgtaagttgagtaagacgccctatatcatatggaatcttt |
24766582 |
T |
|
| Q |
713 |
ccggaaataagacttccggagagatctatgatttggagaaaattgagagttgtgatgcatccagggatattccccgaaatgcccttccagtcggagacgg |
812 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| || |
|
|
| T |
24766583 |
ccggaaataacatttccagagagatctatgatttggagaaaatcgagggttgtgatgcatccagggatatttcccgaaatacccttccaatcggagatgg |
24766682 |
T |
|
| Q |
813 |
taatgctagagagccgtgttaggttgcaaattgatggggagatgtgtccggtcatgtatccatttttcgtggttttggtatatttgtagcggcgatggtt |
912 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||| ||||| |
|
|
| T |
24766683 |
taatgctagatagttgtgttaggttgcaaattgatggggagatgtgtccggtcatgtatccact----gtggttttggagtgtttgtagcggcggtggtt |
24766778 |
T |
|
| Q |
913 |
gtcaccaacagtgaggccgcggagtgtgatttctgcgacacgatgtgtggtagggtcgcaactgattccgtaccaaccgtagcagcagttggtacttct- |
1011 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||| ||| ||||||| |||||||||| ||| |
|
|
| T |
24766779 |
gtcaccaacagtgaggccgcggagtgtgatttctgcgatgcgatttgtggtagggtcgcagctgactccgtaacaatcgtagcaacagttggtacctctc |
24766878 |
T |
|
| Q |
1012 |
catgaatggaggattccaaagttaggttcgttgagagctgctttgaa-gacatgagtgatgcccattcaga |
1081 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
24766879 |
catgaatggaaaactccaaagttaggttcgttgagagctgctttgaaggacatgagtgatgcccactcaga |
24766949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 460
Target Start/End: Original strand, 24750847 - 24751281
Alignment:
| Q |
11 |
caacctatttattcatgtttgtgtatgtgaccatgagtgcagggctgaagtggcttgccgcaaaggtgtcgattgtatacaaacgatgccggcggaagat |
110 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||| | |||| |
|
|
| T |
24750847 |
caacctatttgtttatgtttgtgtatgcaaccatgagtgcagggttgaagtggcttgccgcaaagatg-----------------atgccggctgtagat |
24750929 |
T |
|
| Q |
111 |
ggcttaaggaagaagcaactggaattttcccaaagagatggttgtgactaaagtccac--atggccaatgtacaaagctaatgccatcgacttaggaatt |
208 |
Q |
| |
|
||| ||||||||||||||| | |||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
24750930 |
ggcgtaaggaagaagcaaccgaaattctcccaaagagacggttgtgagtaaagtccatgtatgaaaaatgtacaaagctaatgccatagacttaggaatt |
24751029 |
T |
|
| Q |
209 |
aaaccgttcaaattgttccgcgacaaatcaaggttaatgaaatatgaagtttcgctaaacacgtccggtataggtccccttaaagcgtttctacttaaat |
308 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
24751030 |
aaaccgttcaaattgttccgcggcagatcaaggttaatgaaatatgaagtttcactgaacacatccagtgtaggtccccttaaagcgtttctacttaaat |
24751129 |
T |
|
| Q |
309 |
ccaaatgactcattctagaagccaacaaagttcttgggatcctcccagtcaatttgttatacttcaggttcaacgagtccaagaccggcatttgtcctag |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| || |||| || ||||||||||||||||| || ||| ||||| | | | |||||| |
|
|
| T |
24751130 |
ccaaatggctcattctagaagccaacaaagtccttgggatccttcccatcaagtttctatacttcaggttcaacaagaccaggaccgacgtgtatcctag |
24751229 |
T |
|
| Q |
409 |
cgaaaaaggaattggaccagataatcggttcaacgacaagtccaagtctgct |
460 |
Q |
| |
|
| |||||||||| |||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
24751230 |
tgtaaaaggaattagaccgcgtaatcgattcaacaacaagtccaagtctgct |
24751281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 562 - 879
Target Start/End: Original strand, 24751293 - 24751593
Alignment:
| Q |
562 |
aatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagatatgattgtctgca |
661 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
24751293 |
aatggggcctccaatggtgttgttgcggagatcaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcacgagatatgatt------- |
24751385 |
T |
|
| Q |
662 |
aggttgagcaccataagctgagtaagacgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttggagaaaattgagag |
761 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||| || |
|
|
| T |
24751386 |
--------------aagctaagtaaggcgcccaatatcatatggaatctttgaggaaataaggtttttggagagatcgatgatttggagaaaattaaggt |
24751471 |
T |
|
| Q |
762 |
ttgtgatgcatccagggatattccccgaaatgcccttccagtcggagacggtaatgctaga----gagccgtgttaggttgcaaattgatggggagatgt |
857 |
Q |
| |
|
|| || ||| |||||||||| ||| |||| |||||||||| ||| | |||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
24751472 |
atgcgagacattcagggatatttcccaaaatccccttccagttggaaatggtaatgctagatagagagttgtgttaggttgcaaattgagggggagatgt |
24751571 |
T |
|
| Q |
858 |
gtccggtcatgtatccattttt |
879 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
24751572 |
gtccgttcatgtatccactttt |
24751593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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