View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-6-Insertion-13 (Length: 786)
Name: NF2911-6-Insertion-13
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-13 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0911 (1 HSPs) |
| | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 5 - 786
Target Start/End: Complemental strand, 8479920 - 8479137
Alignment:
| Q |
5 |
acattattattactgaagtagtctccaatatgaaccgaagccaacttcttaattctctctaaa-attcagaaattcattgagaagggggagttgaaccct |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8479920 |
acattattattactgaagtagtctctaatatcaaccgaagccaacttctcaattctctcttaacattcagaaattcattgagaagggggagttgaaccct |
8479821 |
T |
|
| Q |
104 |
tcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattttt-agacaaaacatgcgtgaatccttcggctgccatacg |
202 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8479820 |
tcacacgggtgttgtacgaagttttccctaaaacttgctttttcaatgtttgctgctgttttttagacaaaacttgcgtgaatccttcggctgccatacg |
8479721 |
T |
|
| Q |
203 |
ttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacatttttcaaaacctggatttccttggactgaattgaaacttcacgcacctga |
302 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8479720 |
ttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacatttttcgaaacctggatttccttggactgaattgaaacttcacgcacctga |
8479621 |
T |
|
| Q |
303 |
tcagcagtaagctcattagttggtgcacttgaattcgcttctgtctctgctggtatggattgcacatttgctgaatgttccaatgccataacatctaatg |
402 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8479620 |
tcagcagtaagctcattagctgctgcacttgaattcgcttctgtctctgctggtctggattgcacatttgctgaatgttccaatgccataacatctaatg |
8479521 |
T |
|
| Q |
403 |
atggctgctgatgtgatacgacaatgtcaccacttacattttcctgtggagttgcgacttctgcatctacaatttcctcaagaacatgaacagatgttga |
502 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
8479520 |
atggctgctgatgtgatacggcagtgtcaccacttacattttcctgtggagttgcgacttctgcatctacaatttcctcaataatatgaacagatgttga |
8479421 |
T |
|
| Q |
503 |
aggcagcatcttttgattgataccgatgtcaacattttcaaagttgaatgtcatgtccgaaggcgctttgtccatctgcaagtctgtctgcacttcatct |
602 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8479420 |
aagcagcatcttttgattgataccgatgtcaacattttcaaagctgaatgtcatgtccgaaggtgctttgtccatctgcaagtctgtctgcacttcatct |
8479321 |
T |
|
| Q |
603 |
tgagaaaccggaataacatcattaacattttcaacatttacctcggtaannnnnnnnngttgaactggtgctgcttgcatcaaactaatatttccctcat |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8479320 |
tgagaaaccggaataacatcattaacattttcaacatttacctccgtaatttctttttgctgaactggtgctgcttgaatcaaactaatatttccctcat |
8479221 |
T |
|
| Q |
703 |
ttgtactttgttcttcagcctcattgtgttgtaaggcggcctccaaagctacaaattcctcagtggaattgatatcctgatgtg |
786 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
8479220 |
ttgtactgtgttcttcagcctcattgtgttgtaaggtggcctccaaagctacaaattcgtgagtggaattgatatcctgatgtg |
8479137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 6478997 - 6478947
Alignment:
| Q |
3 |
caacattattattactgaagtagtctccaatatgaaccgaagccaacttct |
53 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6478997 |
caacatttttactactgaagtagtctctaatatcaaccgaagccaacttct |
6478947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 6737004 - 6737054
Alignment:
| Q |
3 |
caacattattattactgaagtagtctccaatatgaaccgaagccaacttct |
53 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
6737004 |
caacattgttactactgaagtagtctctaatatcaactgaagccaacttct |
6737054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 8455668 - 8455718
Alignment:
| Q |
3 |
caacattattattactgaagtagtctccaatatgaaccgaagccaacttct |
53 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
8455668 |
caacattgttactactgaagtagtctctaatatcaaccgaagctaacttct |
8455718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 15 - 783
Target Start/End: Original strand, 19936291 - 19937060
Alignment:
| Q |
15 |
tactgaagtagtctccaatatgaaccgaagccaacttcttaattctctctaaaattcagaaattcattgagaagggggagttgaacccttcgcacgggtg |
114 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936291 |
tactgaagtagtctctaatatccatcgaagccaacttctcaattctctctaacattcagaaattcattgagaagggggagttgaacccttcgcacgggtg |
19936390 |
T |
|
| Q |
115 |
ttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctatttt-tagacaaaacatgcgtgaatccttcggctgccatacgttgatcatact |
213 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
19936391 |
ttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagacaaaacctgcgtgaatccttcggcggccatacattgatcatact |
19936490 |
T |
|
| Q |
214 |
cccgaatgcaagcccataaatccaagtcattttgaacatttttcaaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaag |
313 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936491 |
cccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttccttggattgaattgaaacttcacgcacctgatcagcagtaag |
19936590 |
T |
|
| Q |
314 |
ctcattagttggtgcacttgaattcgcttctgtctctgctggtatggattgcacatttgctgaatgttccaatgccataacatctaatgatggctgctga |
413 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |
|
|
| T |
19936591 |
ctcattagctgctgcacttgaattcgcttttgcctctgctggtctggattgcacatttgctgactgttccaatgccataacagctaatgatggctgctaa |
19936690 |
T |
|
| Q |
414 |
tgtgatacgacaatgtcaccacttacattttcctgtggagttgcgacttctgcatctacaatttcctcaagaacatgaacagatgttgaaggcagcatct |
513 |
Q |
| |
|
||||||||| || ||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19936691 |
tgtgatacggcattgtcaccgcttacattttcttgtggagttgcgacttctgcgtctacagtttcctcaagaacatgaacagatgttgagggcagcatct |
19936790 |
T |
|
| Q |
514 |
tttgattgataccgatgtcaacattttcaaagttgaatgtcatgtccgaaggcgctttgtccatctgcaagtctgtctgcacttcatcttgagaaaccgg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19936791 |
tttgattgataccgatgtcaacattttcaaagctgaatgtcatgtccgaaggcgctttgtccatctgcaagtctgtctgcacttcatcttgagaaactgg |
19936890 |
T |
|
| Q |
614 |
aataacatcattaacattttcaacatttacctcggtaannnnnnnnngttgaactggtgctgcttgcatcaaactaatatttccctcatttgtactttgt |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936891 |
aataacatcattaacattttcaacatttacctccgtaatttctttttgctgaactggtgctgcttgcatcaaactaatatttccctcatttgtactttgt |
19936990 |
T |
|
| Q |
714 |
tcttcagcctcattgtgttgtaaggcggcctccaaagctacaaattcctcagtggaattgatatcctgat |
783 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936991 |
tcttcagcctcattgggttgtaaagtggcctccaaagctacaaattcctcagtggaattgatatcctgat |
19937060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 73 - 646
Target Start/End: Complemental strand, 41068217 - 41067649
Alignment:
| Q |
73 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattttt-agaca |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
41068217 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
41068118 |
T |
|
| Q |
172 |
aaacatgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacatttttcaaaacctggatttc |
271 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41068117 |
aaacttgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttc |
41068018 |
T |
|
| Q |
272 |
cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagttggtgcacttgaattcgcttctgtctctgctggtatggattgcacattt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
41068017 |
cttggactgaattgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgctggtctggattgcacatta |
41067918 |
T |
|
| Q |
372 |
gctgaatgttccaatgccataacatctaatgatggctgctgatgtgatacgacaatgtcaccacttacattttcctgtggagttgcgacttctgcatcta |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067917 |
gctgaatgttccaatgccataacatctaatgatggctactgatgtgaaacggcattgtcaccacttacattttcctgtggagttgcgacttctgcatcta |
41067818 |
T |
|
| Q |
472 |
caatttcctcaagaacatgaacagatgttgaaggcagcatcttttgattgataccgatgtcaacattttcaaagttgaatgtcatgtccgaaggcgcttt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
|
|
| T |
41067817 |
taatttcctcaagaacatgaacagatgttgaaggcagcatcttttgattgataccgatgtcgacattttc------gaatgtcatgtctgaaggcgcttt |
41067724 |
T |
|
| Q |
572 |
gtccatctgcaagtctgtctgcacttcatcttgagaaaccggaataacatcattaacattttcaacatttacctc |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067723 |
gtccatctgcaagtctgtctgcacttcatcttgagaaaccggaataacatcattaacattttcaacatttacctc |
41067649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 73 - 532
Target Start/End: Original strand, 10032981 - 10033441
Alignment:
| Q |
73 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattttt-agaca |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
10032981 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata |
10033080 |
T |
|
| Q |
172 |
aaacatgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacatttttcaaaacctggatttc |
271 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10033081 |
aaacttgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc |
10033180 |
T |
|
| Q |
272 |
cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagttggtgcacttgaattcgcttctgtctctgctggtatggattgcacattt |
371 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||| || | |||||||||||||| |
|
|
| T |
10033181 |
cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtttctgttgatctggattgcacattt |
10033280 |
T |
|
| Q |
372 |
gctgaatgttccaatgccataacatctaatgatggctgctgatgtgatacgacaatgtcaccacttacattttcctgtggagttgcgacttctgcatcta |
471 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033281 |
gttgaatgttccaatgccataacatctaatgatgtctgctgatgtgatacgacagtgtccccacttacattttcctgtggagttgcgacttctgcatcta |
10033380 |
T |
|
| Q |
472 |
caatttcctcaagaacatgaacagatgttgaaggcagcatcttttgattgataccgatgtc |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
10033381 |
taatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgatactgatgtc |
10033441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 2776 - 2934
Alignment:
| Q |
99 |
acccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattt-ttagacaaaacatgcgtgaatccttcggctgcc |
197 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| || | ||| ||||||||||||||||| |||| || || || || || |||||||| ||||| | |||| |
|
|
| T |
2776 |
accctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaagccttctgttgcc |
2875 |
T |
|
| Q |
198 |
atacgttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacattttt |
256 |
Q |
| |
|
|| |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
2876 |
atccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt |
2934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 310 - 249
Alignment:
| Q |
99 |
acccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgct |
160 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||| || | ||| ||||||||||||||||| |||| |
|
|
| T |
310 |
accctttgcacgggtgttatacgaagctttacccataacttgctttttcaatgtttgttgct |
249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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