View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-6-Insertion-15 (Length: 574)
Name: NF2911-6-Insertion-15
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Original strand, 1077777 - 1078226
Alignment:
| Q |
8 |
gcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattccatctgaagctttaagatgcatacaagttg |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1077777 |
gcttggaggttatggaaagagggaaattcaaaagaattgattgatgattgtctaaaggactcatatattccatctgaagctttaagatgcatacaagttg |
1077876 |
T |
|
| Q |
108 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaaccaaaggaacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1077877 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaaccaaaggaacc |
1077976 |
T |
|
| Q |
208 |
tggtttcataatacaaagggtctctaatgagggagaatctacaacgaagcctttctcaatgaatgaggttactatttcggtaatagatgctagatgaaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1077977 |
tggtttcataatacaaagggtctctaatgagggagaatctacaacgaagcctttctcaatgaatgaggttactatttcggtaatagatgctagatgaaaa |
1078076 |
T |
|
| Q |
308 |
acatatatcaatggacgtttagttccgtcaactttgattagatataccaatggaaaaatttcatctcaatagcctatagctacagtagtttcagacaaca |
407 |
Q |
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| T |
1078077 |
acatatatcaatggacgtttagttccgtcaactttgattagatataccaatggaaaaatttcatctcaatagcctatagctacagtagttttggacaaca |
1078176 |
T |
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| Q |
408 |
aaatgtgagacttatacctactgtcaatgacacttattgaattattttat |
457 |
Q |
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| T |
1078177 |
aaatgtgagacttatacctacggtcaatgacacttattgagttattttat |
1078226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 1050874 - 1051174
Alignment:
| Q |
8 |
gcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattccatctgaagctttaagatgcatacaagttg |
107 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1050874 |
gcttggaggttatggaaagagggaaattcagaagaattaattgatgattgtctaaaggactcatatattccatctgaagctttaagatccatacaagttg |
1050973 |
T |
|
| Q |
108 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaaccaaaggaacc |
207 |
Q |
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| T |
1050974 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaaccaaaggaacc |
1051073 |
T |
|
| Q |
208 |
tggtttcataatacaaagggtctctaatgagggagaatctacaacgaagcctttctcaatgaatgaggttactatttcggtaatagatgctagatgaaaa |
307 |
Q |
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||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
1051074 |
tggtttcataatacaaagggtctttgatgaaggagaatctacaacgaagcctttctcaatcaatgaggttactatttcgttaatagatgctagatgaaaa |
1051173 |
T |
|
| Q |
308 |
a |
308 |
Q |
| |
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| |
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|
| T |
1051174 |
a |
1051174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 1091656 - 1091956
Alignment:
| Q |
8 |
gcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattccatctgaagctttaagatgcatacaagttg |
107 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091656 |
gcttggaggttatggaaagagggaaattcggaagaattgattgatgattgtctaagggactcatatattccatctgaagctttaagatgcatacaagttg |
1091755 |
T |
|
| Q |
108 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaaccaaaggaacc |
207 |
Q |
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| T |
1091756 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacaaatgaatctgttttagcccaaccaaaggaacc |
1091855 |
T |
|
| Q |
208 |
tggtttcataatacaaagggtctctaatgagggagaatctacaacgaagcctttctcaatgaatgaggttactatttcggtaatagatgctagatgaaaa |
307 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||||| ||||||||||||| |
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| T |
1091856 |
tggtttcataatgcaaagggtctctaatgagggagaatctacaacgaagtctttctcaatcaatgaggtcactatttcgttaataggtgctagatgaaaa |
1091955 |
T |
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| Q |
308 |
a |
308 |
Q |
| |
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| T |
1091956 |
a |
1091956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 1108018 - 1108263
Alignment:
| Q |
8 |
gcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattccatctgaagctttaagatgcatacaagttg |
107 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||||||||| |||| ||||||||||||| | ||||||||||||| |
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|
| T |
1108018 |
gcttggaggttgtggaaagaaggaaactcaaaagaattgattgaggattgtttcggggactcatacattctatctgaagctttacgttgcatacaagttg |
1108117 |
T |
|
| Q |
108 |
gtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaaccaaaggaacc |
207 |
Q |
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|||||||||||||||||| |||||||||||| || || |||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
1108118 |
gtcttttatgtctacaacatcatccaaatgacaggcctaatatggtttcagtgcttgcgatgttgacgaatgaaactgttttagctcaaccaaaggaacc |
1108217 |
T |
|
| Q |
208 |
tggtttcataatacaaagggtctctaatgagggagaatctacaacg |
253 |
Q |
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||||||| ||||||||| |||||||| ||| |||||||||||||| |
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| T |
1108218 |
tggtttcgtaatacaaatggtctctactgaaagagaatctacaacg |
1108263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 306 - 471
Target Start/End: Original strand, 1094880 - 1095045
Alignment:
| Q |
306 |
aaacatatatcaatggacgtttagttccgtcaactttgattagatataccaatggaaaaatttcatctcaatagcctatagctacagtagtttcagacaa |
405 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||| ||||||||| || |||||| | || ||||||| ||||||| |||||||||||||| |
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| T |
1094880 |
aaacatataccaatggacgtttagttctgtcaactttgattacatataccaacggcaaaattccgtcccaatagcatatagctttggtagtttcagacaa |
1094979 |
T |
|
| Q |
406 |
caaaatgtgagacttatacctactgtcaatgacacttattgaattattttatccatagcagttttc |
471 |
Q |
| |
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|||||| | ||||||| | ||| ||||||||||| |||| |||| ||||| |||||||||||||| |
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|
| T |
1094980 |
caaaatttaagacttacatctattgtcaatgacatgtatttaattgttttacccatagcagttttc |
1095045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 500 - 569
Target Start/End: Original strand, 1078467 - 1078536
Alignment:
| Q |
500 |
tataaatagtttttcgactcaaataattctttcttatttttcattatgattgggaccgtagggagtagta |
569 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
1078467 |
tataaatagtttttcgactcaaataattctttcatatttttcattatgattgagaccgtagggagtagta |
1078536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 1065596 - 1065658
Alignment:
| Q |
306 |
aaacatatatcaatggacgtttagttccgtcaactttgattagatataccaatggaaaaattt |
368 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1065596 |
aaacatataccaatggacgtttagctccgtcaactttgattagatataccaacggaaaaattt |
1065658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 1065660 - 1065717
Alignment:
| Q |
400 |
agacaacaaaatgtgagacttatacctactgtcaatgacacttattgaattattttat |
457 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||| |
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| T |
1065660 |
agacaacaaaatgtgagacttataccaaccgtcaatgacacctattgaattgttttat |
1065717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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