View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-6-Insertion-17 (Length: 516)
Name: NF2911-6-Insertion-17
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-17 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0340 (2 HSPs) |
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| [»] scaffold0361 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Original strand, 6436862 - 6437370
Alignment:
| Q |
7 |
acatgtttgtttcaatttcttttttgtgatcttcggattaaggttttatgatggggataattgattttgtctgttatcctattgataattgttactcnnn |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6436862 |
acatgtttgtttcaatttcttttttgtgatcttcggattaaggttttatgatggggataattgattttgtctgttatcctattgataattgttactcttt |
6436961 |
T |
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| Q |
107 |
nnnnnnnnnnn-ctgggttaaagtgaggaaaattaagaaagatgagatgaatgatgctcttggaagagatggatgatgttccttcattttggtccatgtt |
205 |
Q |
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| T |
6436962 |
ttttttatttttctgggttaaagtgaggaaaattgagaaagatgagatgaatgatgttgttggaagagatggatgatgttctttcattttggttcatgtt |
6437061 |
T |
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| Q |
206 |
gttatatcacagcttacatgtctccaaaaatatgtcaaactcagcnnnnnnnnggagttacggccatatctaatgttagagatcagggaccattataaca |
305 |
Q |
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| T |
6437062 |
gttatatcacagcttacatgtctccaaaaatatgtcaa-ctcagcttttttgtggagttacggccaaatctaatgttagagatcacggaccattataaca |
6437160 |
T |
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| Q |
306 |
gcgaggtgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttactttgtttctttctttatgtgctgtctt |
405 |
Q |
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| T |
6437161 |
gtgagttgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttaatttgtttctttc-ttatgttttgttct |
6437259 |
T |
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| Q |
406 |
atgcttattacacaatttgtttgatagtgatttattgaatttgaaacttttaaatagataacttttttcttaaagaagtaaattgataacttaccaatca |
505 |
Q |
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| T |
6437260 |
atgcttattacacaatttgtttgatagtgatttattgaatttgaaacttttaaatagataacttttttcttaaagaagtaaattgataacttaccaatca |
6437359 |
T |
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| Q |
506 |
tcttcatttta |
516 |
Q |
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||||||||||| |
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| T |
6437360 |
tcttcatttta |
6437370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 294 - 472
Target Start/End: Complemental strand, 18898 - 18724
Alignment:
| Q |
294 |
accattataacagcgaggtgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttactttgtttctttcttt |
393 |
Q |
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| T |
18898 |
accattatgacagcgaggtgcacattcgtaaactaaaatgattgtttaccgtcattttaataaaatataattatttta-ttttactttgtttctttc-tt |
18801 |
T |
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| Q |
394 |
atgtgctgtcttatgcttattacacaatttgtttgatagtgatttattgaatttgaaacttttaaatagataacttttt |
472 |
Q |
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||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||| |
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| T |
18800 |
atgctatgtcctatgcttactacacaatttgtttgaaagtgattcgttgaatttgaaacgtt--aatagataacttttt |
18724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 19126 - 19010
Alignment:
| Q |
118 |
ctgggttaaagtgaggaaaattaagaaagatgagatgaatgatgctcttggaagagatggatgatgttccttcattttggtccatgttgttatatcacag |
217 |
Q |
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| T |
19126 |
ctgggttaaagtgaggaaaattgagaaagatgagatgaatgatgttgttggaagagatgaatgatgttctttcattttggttcatgtggttatatcac-t |
19028 |
T |
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| Q |
218 |
cttacatgtctccaaaaa |
235 |
Q |
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| T |
19027 |
cttacatgtcttcaaaaa |
19010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 35714249 - 35714344
Alignment:
| Q |
7 |
acatgtttgtttcaatttcttttttgtgatcttcggattaaggttttatgatggggataattgattttgtctgttatcctattgataattgttactc |
103 |
Q |
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|||||||||||||| ||| |||||| | || || || ||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||| |
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| T |
35714249 |
acatgtttgtttcagtttttttttt-taatttttggcttaaggttttatgatggggataattgattttatatgttatcatattgatgattgttactc |
35714344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 4975 - 4942
Alignment:
| Q |
41 |
ggattaaggttttatgatggggataattgatttt |
74 |
Q |
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| T |
4975 |
ggattaaggttttatgatggggataattgatttt |
4942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 5470 - 5538
Alignment:
| Q |
165 |
ttggaagagatggatgatgttccttcattttggtccatgttgttatatcacagcttacatgtctccaaa |
233 |
Q |
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| T |
5470 |
ttggaagagatgaaagatgctctttcattttggtccctgttgccacctcacaacttacatgtctccaaa |
5538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 13034063 - 13033963
Alignment:
| Q |
143 |
aaagatgagatgaatgatgctcttggaagagatggatgatgttccttcattttggtccatgttgttatatcacagcttacatgtctccaaaaatatgtca |
242 |
Q |
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|||||||||||||||| || | |||||||||||| | | |||| ||||||||||| ||||| ||| ||||| |||||| || |||| ||| |||||| |
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| T |
13034063 |
aaagatgagatgaatgttgttgttggaagagatgaagggtgttatttcattttggtttatgtttctatctcacaacttacaagtgtccagaaaaatgtca |
13033964 |
T |
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| Q |
243 |
a |
243 |
Q |
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| T |
13033963 |
a |
13033963 |
T |
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