View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-6-Insertion-19 (Length: 468)
Name: NF2911-6-Insertion-19
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-19 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 38391411 - 38391053
Alignment:
| Q |
8 |
ataattgccatatccgtaagaacaatgcaccgacataaattctcccatcagtcactgaatcacagtgcattacagctcgggggaaaacggttatggcaat |
107 |
Q |
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| T |
38391411 |
ataattgccatatccgtaagaacaatgcaccgacataaattctcccatcagtcactgaatcacagtgcattacagctcgggggaaaacggttatggcaat |
38391312 |
T |
|
| Q |
108 |
gatggtcattacgcaatctgagacagtaggctggcacacatgagtaatggatttgtatgaattattagtagttacttaaattgaaaaactacattattca |
207 |
Q |
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| T |
38391311 |
gatggtcattacgcaatctgagacagtaggctggcacacatgagtaatggatttgtatgaattattagtagttacttaaattgaaaaactacattattca |
38391212 |
T |
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| Q |
208 |
aacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttcca |
307 |
Q |
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| T |
38391211 |
aacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttcca |
38391112 |
T |
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| Q |
308 |
attccatacttgttggttgccaaggcagctgggtggcgtttagatttttctaactggta |
366 |
Q |
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| T |
38391111 |
attccatacttgttggttgccaaggcagctgggtggcgtttagatttttctaactggta |
38391053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 144 - 277
Target Start/End: Original strand, 38389798 - 38389931
Alignment:
| Q |
144 |
cacatgagtaatggatttgtatgaattattagtagttacttaaattgaaaaactacattattcaaacctacatgacaaagtttgaagatatagtaaaatg |
243 |
Q |
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| T |
38389798 |
cacatgagcaatggatttttatgaattattagtagttacttaaattgaaaaaccacattgttcagacctacatgacaaagttagaagatatagtaaaatg |
38389897 |
T |
|
| Q |
244 |
aattgtgcttcatgagtatatattatcttgatac |
277 |
Q |
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| T |
38389898 |
aattgcgcttcatgagtatgtattctcttgatac |
38389931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 395
Target Start/End: Original strand, 39623809 - 39623982
Alignment:
| Q |
221 |
aagtttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttccaattccatacttgt |
320 |
Q |
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| T |
39623809 |
aagtttgaagatatagtgagatgaattgcgcttcatgagtaaatagtctcttga--caagcaagctttgaataattccaactttccaattccatacttgt |
39623906 |
T |
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| Q |
321 |
tggttgccaaggcagctgggtggcgtttagatttttctaactg-gtagcaagtttattagcaagggttatcccaac |
395 |
Q |
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| T |
39623907 |
ttgttgtcaaagcagctggatggcttttagacttgtcaaattgagtagcaagttcattagcaaggcttttcccaac |
39623982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 38391051 - 38391005
Alignment:
| Q |
422 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaa |
468 |
Q |
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| T |
38391051 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaa |
38391005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 39591048 - 39591189
Alignment:
| Q |
208 |
aacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttcca |
307 |
Q |
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||||||| || ||||||||||||||||| |||| |||||| | |||||||||| |||| |||||||| || | |||||| ||||||| |||||| |
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| T |
39591048 |
aacctacctggcaaagtttgaagatatataaaaacgaattgcgtttcatgagtaagtattctcttgataagcaa--gctttgaataattcccagtttcca |
39591145 |
T |
|
| Q |
308 |
attccatacttgttggttgccaaggcagctgggtggcgtttaga |
351 |
Q |
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| T |
39591146 |
attccatacttgttggttgtcaaagctgctgggtgacttttaga |
39591189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 468
Target Start/End: Complemental strand, 38389776 - 38389653
Alignment:
| Q |
346 |
tttagatttttctaact-ggtagcaagtttattagcaagggttatcccaacttcggtcagctgaaatgcctctgcatactgtctaggcgttagaatccta |
444 |
Q |
| |
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||||||||||||||||| |||||||| || |||||||| | |||| ||||| || || |||| ||||||||||||| ||| | |||| || | | |||| |
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| T |
38389776 |
tttagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcctctgcaaactctttaggtgtcacataccta |
38389677 |
T |
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| Q |
445 |
taaggtttttcattttccgcccaa |
468 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
38389676 |
taagatttttcattttccgcccaa |
38389653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 395
Target Start/End: Original strand, 39576914 - 39577024
Alignment:
| Q |
286 |
tttgaacgattcccactttccaattccatacttgttggttgccaaggcagctgggtggcgtttagatttttctaactg-gtagcaagtttattagcaagg |
384 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||| | ||| |||||||| |||| |||||| || || || || ||| |||||| |||| ||||| |
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| T |
39576914 |
tttgaacaattcccgttttccaattccatacttgttggtcgtcaaagcagctggatggcttttagacttgtcaaattgagtaacaagttcattaccaagg |
39577013 |
T |
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| Q |
385 |
gttatcccaac |
395 |
Q |
| |
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| T |
39577014 |
cttctcccaac |
39577024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 344
Target Start/End: Original strand, 39540974 - 39541091
Alignment:
| Q |
225 |
ttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttccaattccatacttgttggt |
324 |
Q |
| |
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|||||||||||| |||||| ||| ||||||| |||| ||||| |||||||| ||| | ||| || |||||| ||||||| |||||| || ||||| |
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| T |
39540974 |
ttgaagatatagacaaatgagttgcgcttcataagtaaatattctcttgataaacaa--gctttaaaaagttcccattttccaactccatatttcttggt |
39541071 |
T |
|
| Q |
325 |
tgccaaggcagctgggtggc |
344 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
39541072 |
tgtcaaggcagctgggtggc |
39541091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 464
Target Start/End: Original strand, 38389958 - 38390106
Alignment:
| Q |
320 |
ttggttgccaaggcagctgggtggcgtttagatttttctaact-----ggtagcaagtttattagcaagggttatcccaacttcggtcagctgaaa-tgc |
413 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| || |||| |||||||||| || || || ||||| ||| |
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| T |
38389958 |
ttggttgccaaggcagctgggtgg-ttttagatttttcttactagctaggtagcaagtttaacaggaaggcttatcccaacatcagtgagttgaaattgc |
38390056 |
T |
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| Q |
414 |
ctctgcatactgtctaggcgttagaatcctataaggtttttcattttccgc |
464 |
Q |
| |
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| T |
38390057 |
atc-gcaaactctctaggtgtcaaaaacatataaggtttttcatttaccgc |
38390106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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