View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-6-Insertion-21 (Length: 311)

Name: NF2911-6-Insertion-21
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-6-Insertion-21
NF2911-6-Insertion-21
[»] chr1 (1 HSPs)
chr1 (2-311)||(43673563-43673872)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 43673563 - 43673872
Alignment:
Q  2 ccaacaaaaagttgtttgtgctggttctttaatttatccatccacaagtatatannnnnnnnnnnnnnnnnnatgttccatcgcaataatttatatgctg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||    
T  43673563 ccaataaaaagttgtttgtgctggttctttaatttatccatccacaagtatatatttttattttatttttttatgttccatcgcaataatttatatgctg 43673662  T
Q  102 tatttgatcattgatagcacaagtacttgattcccattaaaaatagtgtagaatattttttgtggtcatatcattggctacttattaattatatttcctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43673663 tatttgatcattgatagcacaagtacttgattcccattaaaaatagtgtagaatattttttgtggtcatatcattggctacttattaattatatttcctt 43673762  T
Q  202 ttcattacaaatttcagaatgacgtgaaaagatcaaagaaaaagaggatggaaatatctgaattcttgtttttaattttcaccttattgatcacttgtct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43673763 ttcattacaaatttcagaatgacgtgaaaagatcaaagaaaaagaggatggaaatatctgaattcttgtttttaattttcaccttattgatcacttgtct 43673862  T
Q  302 atatatattg 311  Q
    ||||||||||    
T  43673863 atatatattg 43673872  T

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