View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-6-Insertion-5 (Length: 1076)
Name: NF2911-6-Insertion-5
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 318 - 1014
Target Start/End: Complemental strand, 4730581 - 4729889
Alignment:
| Q |
318 |
ataagctatttcaacaaatttatgaaaataaattgaaaacaacttatgaataaatagtcataagctgtttgcgtaaactcttccaaagagtttcacacgt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4730581 |
ataagctatttcaacaaatttatgaaaataaattgaaaacaacttatgaatac-taatcataagttgtttgcgtaaactcttccaaagagtttcacactc |
4730483 |
T |
|
| Q |
418 |
acgtggataaacacaaacaagtaaattcaaacaaacgacaaaaatataataataagtacgtataaattgttgtgagcattgtagatagatactaaactaa |
517 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
4730482 |
acgtagataaacacaaacaagtaaattcaaacaaacgataaaaatataataataagtacatataaattgttgtgagcattgtagatagatactatactaa |
4730383 |
T |
|
| Q |
518 |
ataatatagaatgatgtaaacaaattataattataattgtagtaataaaatgcaatttacataacaagcccattattacatgggacggaaatgttaaatg |
617 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4730382 |
ataatatagaatgatgtaaacaaattataattataattgtaataataaaatgcaatttacataacaagcccattattacatgggacggaaatgttaaatg |
4730283 |
T |
|
| Q |
618 |
tggctggacagttggaaacaaatggttctagcaggaattgggaattgacaaggag--tattcaatgaaagaggcaaccgagattagcaaaatagtcatat |
715 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
4730282 |
tggctggacagttggaaacaaatggttctagcaggaattgggaattgacaaggagtttattcaatgaaagaggcaatcgagattagtaaaatagtcatat |
4730183 |
T |
|
| Q |
716 |
cgaatccggatgaggaagatagttgatttcaaagtttaataaccacgggcattatacggtgaagtccgcatataagtatgcaataacttatgattgataa |
815 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4730182 |
cgaatccggatgaggaagatagttgatttcaaattttaataaccacgagcattatacggtgaagtccgcatataagtatgcaataacttatgattgat-- |
4730085 |
T |
|
| Q |
816 |
tgaggagtatcgaataccgggtgaatggtaaagaatgttgaaagttagatttccgaatcggtttaaagttttcaaatggagggcgctaagaggggtg-tt |
914 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
4730084 |
------------aataccgggagaatggtaaagaatgttgaaagttagatttctgaatcggtttaaagttttcaaatggagggtgctaagaggggtgttt |
4729997 |
T |
|
| Q |
915 |
cctacgcgtttatggct-ctagataga-gtgtg-catgt-cagatggttatcctc-atgtgaggctcgttat-aaatcga-tggcatca-gcttgtggga |
1006 |
Q |
| |
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||||||||| || |||| | ||||||| ||||| ||||| ||||||||||||| | |||||||||||||||| |||| || |||||||| |||||||||| |
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| T |
4729996 |
cctacgcgtatacggctccaagatagaggtgtgccatgtacagatggttatccccaatgtgaggctcgttataaaattgattggcatcaggcttgtggga |
4729897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 4731054 - 4730741
Alignment:
| Q |
8 |
acatcttcatttagagtttttattttctttcacggctattttcggtttgaatttatctctccccattttgattcagcagccatccataagaaaactgctg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4731054 |
acatcttcatttagagtttttattttctttcacggatattttcggtttgaatttatctctccccattttgattcagcagccatccataaaaaaactgctg |
4730955 |
T |
|
| Q |
108 |
atatcacttcaataattagttcttctccgatatcaaaatgtaggatagaatcaaattcataatacnnnnnnnnnaataaaattcaagtataggacaatag |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4730954 |
atatcacttcaataattagttcttctccgatatcaaaatgtaggatagaatcaaattcataatac-atttttttaataaaattcaagtataggacaatag |
4730856 |
T |
|
| Q |
208 |
gatccgtttgaattgagcgcttaaaatataagtgtttacgtataagctatttttataacaatgaaataaataatgtcaaagtaattttgtataagttata |
307 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4730855 |
gacccgtttgaattgagcgcttaaaatataagtgtttacgtataagctatttttataacaatgaaataaataatgtcaaagtaattttgtataagttata |
4730756 |
T |
|
| Q |
308 |
aattgtgctcataag |
322 |
Q |
| |
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||||||| ||||||| |
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|
| T |
4730755 |
aattgtgttcataag |
4730741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 1577097 - 1577156
Alignment:
| Q |
75 |
ttgattcagcagccatccataagaaaactgctgatatcacttcaataattagttcttctc |
134 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||| |
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|
| T |
1577097 |
ttgattcagcagccattgataagaaatctggcaatatcacttcattaattagttcttctc |
1577156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 1607718 - 1607659
Alignment:
| Q |
75 |
ttgattcagcagccatccataagaaaactgctgatatcacttcaataattagttcttctc |
134 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||| |
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|
| T |
1607718 |
ttgattcagcagccattgataagaaatctggcaatatcacttcattaattagttcttctc |
1607659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 10391282 - 10391317
Alignment:
| Q |
233 |
atataagtgtttacgtataagctatttttataacaa |
268 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
10391282 |
atataagtgcttacgtataagctatttttataacaa |
10391317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 367
Target Start/End: Original strand, 47513686 - 47513716
Alignment:
| Q |
337 |
ttatgaaaataaattgaaaacaacttatgaa |
367 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
47513686 |
ttatgaaaataaattgaaaacaacttatgaa |
47513716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 44606239 - 44606194
Alignment:
| Q |
223 |
agcgcttaaaatataagtgtttacgtataagctatttttataacaa |
268 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||| ||||||| |
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|
| T |
44606239 |
agcgcttattatataagtgtttatgtataagctattttcataacaa |
44606194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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