View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-6-Insertion-7 (Length: 1025)

Name: NF2911-6-Insertion-7
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-6-Insertion-7
NF2911-6-Insertion-7
[»] chr3 (7 HSPs)
chr3 (4-311)||(42207068-42207393)
chr3 (608-787)||(42206780-42206965)
chr3 (875-1008)||(42206632-42206768)
chr3 (854-899)||(42207742-42207787)
chr3 (142-201)||(42208736-42208795)
chr3 (47-88)||(42208845-42208886)
chr3 (782-838)||(42207933-42207989)
[»] chr2 (2 HSPs)
chr2 (131-201)||(6918158-6918228)
chr2 (44-82)||(6918293-6918331)
[»] chr7 (1 HSPs)
chr7 (203-248)||(28965344-28965389)
[»] chr1 (1 HSPs)
chr1 (203-248)||(35088858-35088903)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 42207393 - 42207068
Alignment:
Q  4 aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatgcatcaccaaaccaagggatacattttctctgccca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  42207393 aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaaccaagggatacatattctctgccca 42207294  T
Q  104 gaatc-----aacttcatgtgaagtttcaaaattggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctac 198  Q
    |||||     |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42207293 gaatcgaatcaacttcatgtgaagtttcaacattggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctac 42207194  T
Q  199 atgtaattgatcaattttcaaacaagcactcaaagcatactataacagaaag----------------gctgtaccactaccacatacatgatgatcagt 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||                ||||||| ||||||||||||   |||||||||    
T  42207193 atgtaattgatcaattttcaaacaagcactcaaagcataatataacagaaaggctgcataacctaaaggctgtacaactaccacatac---atgatcagt 42207097  T
Q  283 tcatcaattgaaatttttgtacccactta 311  Q
    |||||||||||||||||||||||||||||    
T  42207096 tcatcaattgaaatttttgtacccactta 42207068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 608 - 787
Target Start/End: Complemental strand, 42206965 - 42206780
Alignment:
Q  608 atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttac-aaatgtttatgaaacgatgtatgtgc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  42206965 atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttacaaaatatttatgaaacgatgtatgtgc 42206866  T
Q  707 atcaattcctaccctcaaaattga-----tgttacaaaattcagatgaatgtcactgcaagagtttttgatgttacaaaattgaag 787  Q
    ||||||||||||||||||||||||      |   ||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  42206865 atcaattcctaccctcaaaattgaacgagggacccaacattcagatgaatgtcactgcaagattttttgatgttacaaaattgaag 42206780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 875 - 1008
Target Start/End: Complemental strand, 42206768 - 42206632
Alignment:
Q  875 attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaac-aaattaccgtagcaaacaaaaacatttatgttt 973  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42206768 attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt 42206669  T
Q  974 cg-aacattagcgtc-actgagcacggttcttctctc 1008  Q
    || |||||||||||| |||||||||||||||| ||||    
T  42206668 cgaaacattagcgtcaactgagcacggttcttttctc 42206632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 899
Target Start/End: Complemental strand, 42207787 - 42207742
Alignment:
Q  854 tttctttctttcaagcagaagattgaatgttgttgaataatcaaga 899  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  42207787 tttctttctttcaagcagaagattgaatgttcttgaataatcaaga 42207742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 42208795 - 42208736
Alignment:
Q  142 tatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctacatg 201  Q
    |||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||    
T  42208795 tatccaacaagaaaaagaggaggaattagaagagtttcccaagcttccatatgctacatg 42208736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 42208886 - 42208845
Alignment:
Q  47 atgtcacacatgttagtttatgcatcaccaaaccaagggata 88  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  42208886 atgtcacacatgctagtttatccatcaccaaaccaagggata 42208845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 42207989 - 42207933
Alignment:
Q  782 ttgaagcagaagattgaatgttcctgaataattaagaactagaaaacaggtaaccca 838  Q
    ||||||||||||||||||||||| |||||||  ||||||  ||||| ||||||||||    
T  42207989 ttgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaaccca 42207933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 6918228 - 6918158
Alignment:
Q  131 ttggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctacatg 201  Q
    |||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  6918228 ttggtgtctagtatacaacaagaaagagtggaggaattagaagggttccccaagcttccatatgctacatg 6918158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 6918331 - 6918293
Alignment:
Q  44 cagatgtcacacatgttagtttatgcatcaccaaaccaa 82  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  6918331 cagatgtcacacatgctagtttatccatcaccaaaccaa 6918293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 28965389 - 28965344
Alignment:
Q  203 aattgatcaattttcaaacaagcactcaaagcatactataacagaa 248  Q
    |||||||| | ||||||||||||| |||||||||| ||||||||||    
T  28965389 aattgatcgaatttcaaacaagcattcaaagcatattataacagaa 28965344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 35088858 - 35088903
Alignment:
Q  203 aattgatcaattttcaaacaagcactcaaagcatactataacagaa 248  Q
    |||||||| | ||||||||||||| |||||||||| ||||||||||    
T  35088858 aattgatcgaatttcaaacaagcattcaaagcatattataacagaa 35088903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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