View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-6-Insertion-9 (Length: 969)
Name: NF2911-6-Insertion-9
Description: NF2911-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-6-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 351 - 860
Target Start/End: Complemental strand, 7088203 - 7087694
Alignment:
| Q |
351 |
gttgatgttgtcaacactttcttggtggaaagtggctaaatactataaatcttattttcttataactaaaagttgcaatatttctgtacaaggtgtattt |
450 |
Q |
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| T |
7088203 |
gttgatgttgtcaacacgttcttggtggaaagtggctaaatactataaatcttattttcttataattaaaagttgcaatatttctgtacaaggtgtattt |
7088104 |
T |
|
| Q |
451 |
ttatggtgtacaagggaagctatgtttgttcttatttcacataatctcaatgtcttcatttccacaactgaacttgcgaccataacggcgaactgttggc |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088103 |
ttatggtgtacaagggaagctatgtttgttcttatttcacataatctcaatgtcttcatttccacaactgaacttgcgaccataacggcgaactgttggc |
7088004 |
T |
|
| Q |
551 |
tggaacgttgacttctgagaccggctaatgttaaactcagtcctgcgattatgagtgtctttatcatcgtggttgatggtttctaagggcttttgtggaa |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088003 |
tggaacgttgacttctgagaccggctaatgttaaactcagtcctgcgattatgagtgtctttatcatcgtggttgatggtttctaagggcttttgtggaa |
7087904 |
T |
|
| Q |
651 |
gtgtaacttgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgctttcccaac |
750 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087903 |
gtgtaacttgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgctttcccaac |
7087804 |
T |
|
| Q |
751 |
ctcaccatgttccattgagtcttcttcctcatcgttagtgtttccttctccatctgttgtcacatcaatgcgatcttcagatacagtctcgtgggcgctc |
850 |
Q |
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| T |
7087803 |
ctcaccatgttccattgagtcttcttcctcattgttagtgtttccttctccatctgttgtcacatcaatgctctcttcagattcagtcttgtaggccctg |
7087704 |
T |
|
| Q |
851 |
tgaatatgga |
860 |
Q |
| |
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||||| |||| |
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| T |
7087703 |
tgaatgtgga |
7087694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 351 - 704
Target Start/End: Complemental strand, 7667958 - 7667595
Alignment:
| Q |
351 |
gttgatgttgtcaacactttcttggtggaaagtggctaaatactataaatcttattttcttataactaaaagttgcaatatttctgtacaaggtgtattt |
450 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
7667958 |
gttgatgttgtcaacactttcatggtggaaagtggctaaatactataaatcttattttcttatatttaaaagttgcaatatttctgtacaagatgtattt |
7667859 |
T |
|
| Q |
451 |
ttatggtgtacaagggaagctatgtt---tgttcttatttcacataatctcaatgtcttca------tttccacaactgaacttgcgaccataacggcga |
541 |
Q |
| |
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| T |
7667858 |
ttatggtgtacaagggaagatatgttgtttgttcttctttcacataatctcaatgtcttcactgttatttccacaactgaacttgcgaccataacggcga |
7667759 |
T |
|
| Q |
542 |
actgttggctggaacgttgacttctgagaccggctaatgttaaactcagtcctgcgatta-tgagtgtctttatcatcgtggttgatggtttctaagggc |
640 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
7667758 |
actgttggctggaaagttgacttttgagaccggctaatgttaaactcagtcctgcgatttgtgagtgtctttatcgtcgtggttgatggtttctaagggc |
7667659 |
T |
|
| Q |
641 |
ttttgtggaagtgtaacttgaactccagggtctctttcattgattgaaccatgaaacatgagtg |
704 |
Q |
| |
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| T |
7667658 |
ttttgtggaagtgtaacttgaactccagggtctctttcattgattgaaccatgaaacatgagtg |
7667595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 7088546 - 7088277
Alignment:
| Q |
8 |
atattcaccatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatgataactcc |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088546 |
atattcaccatggactatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatgataactcc |
7088447 |
T |
|
| Q |
108 |
tttgaaatcttctttgatatcaaaatgtacatatttccttaagaaaatggtgcacaaagtaactctcatttttcaccctgcaggcccaagtttgtgtaat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7088446 |
tttgaaatcttctttgatatcaaaatgtacatatttccttaagaaaatggtgcacaaaataactgtcatttttcaccctgcaggcccaagtttgtgtaat |
7088347 |
T |
|
| Q |
208 |
gctagatgtttaggattaatgtttaatgtgcaatgaagtttgttaatttcctcaagcatatattttcttg |
277 |
Q |
| |
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| T |
7088346 |
gctagatgtttaggattaatgtttaatgtgcaatgaagtttgttaatttcctcaagcatatattttcttg |
7088277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 7668185 - 7668032
Alignment:
| Q |
124 |
atatcaaaatgtacatatttccttaagaaaatggtgcacaaagtaactctcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggat |
223 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
7668185 |
atatcaaaatgtacgtatttccttaagaaaatggcgcacaaaataactctcatttttcaccctgcagtcccaagtgtgtgtaatgctagctgtttaggat |
7668086 |
T |
|
| Q |
224 |
taatgtttaatgtgcaatgaagtttgttaatttcctcaagcatatattttcttg |
277 |
Q |
| |
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|||||||||||||| |||||||| | |||||||||||||||||||||||||||| |
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| T |
7668085 |
taatgtttaatgtgtaatgaagtcttttaatttcctcaagcatatattttcttg |
7668032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 729 - 860
Target Start/End: Complemental strand, 7667596 - 7667465
Alignment:
| Q |
729 |
tgttaacatatgctttcccaacctcaccatgttccattgagtcttcttcctcatcgttagtgtttccttctccatctgttgtcacatcaatgcgatcttc |
828 |
Q |
| |
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|||||||||| || ||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7667596 |
tgttaacataagccttcccaatctcaccatgttccattgaatattcttcctcattgttagtgtttccttctccatctgttgtcacatcaatgctctcttc |
7667497 |
T |
|
| Q |
829 |
agatacagtctcgtgggcgctctgaatatgga |
860 |
Q |
| |
|
|||| |||||| || ||| || ||||| |||| |
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| T |
7667496 |
agattcagtcttgtaggccctatgaatgtgga |
7667465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 7668282 - 7668237
Alignment:
| Q |
187 |
gcaggcccaagtttgtgtaatgctagatgtttaggattaatgttta |
232 |
Q |
| |
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|||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
7668282 |
gcagtcccaagtgtgtgtaatgctagctgtttaggattaatgttta |
7668237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 7878042 - 7877950
Alignment:
| Q |
8 |
atattcaccatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatga |
100 |
Q |
| |
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||||| || |||||||| || ||||| ||||| || || ||||||||||| || || |||||||||||||| ||||||||||| ||||||||| |
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| T |
7878042 |
atatttactatggattaccgttatccactctctgccttccaagcctttgcgatatgcttgagcagctttgatacaaaaccagcatgtgaatga |
7877950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 1200884 - 1200817
Alignment:
| Q |
14 |
accatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacac |
81 |
Q |
| |
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||||||||||||||||||||| | || || || ||||| |||||||| ||||| |||||||||||||| |
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|
| T |
1200884 |
accatggattatcgatatcctttatctgcattccaagcttttgcaatatgtttaagcagctttgacac |
1200817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 659 - 741
Target Start/End: Complemental strand, 52386023 - 52385941
Alignment:
| Q |
659 |
tgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgc |
741 |
Q |
| |
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||||| || ||||||||| |||| |||||||| || | ||| | ||||||||| ||||| |||||||||||||| |||||||| |
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| T |
52386023 |
tgaacgccggggtctcttccatttattgaaccttgcaccatcaatgaattattcatactctgtatgttgctgttcacatatgc |
52385941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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