View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-8-Insertion-1 (Length: 1015)
Name: NF2911-8-Insertion-1
Description: NF2911-8
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-8-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 817
Target Start/End: Original strand, 52922628 - 52923452
Alignment:
| Q |
8 |
atatgatgatatagtgacttgaatgtggtgctcaatgaatccaaacacgctctcaagtctcaatttatactcaaccaaatttaaggttggcaaaatgagg |
107 |
Q |
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| T |
52922628 |
atatgatgatataatgacttgaatgtggtgttcaatgaatccaaacacgctctcaggtctcaatctatactcaaccaaatttaaggttggcaaaatgagg |
52922727 |
T |
|
| Q |
108 |
tcagtatgatccattttagacgtcgaggtgagttgaaattatgaaggggtaaagctaatgttggagaacccatttgctctataannnnnnncgattgata |
207 |
Q |
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| T |
52922728 |
tcagtatgatccattttagacgtcgaggtgagttgaaattatgaaggggcaaagctagtgttggagaacccatttgctctataatttttttcgattgata |
52922827 |
T |
|
| Q |
208 |
acctaagggatattgaatgagatttaagaaggaggtcattggttcgatcccaaaaactaagatttatctctcctctaacgatttactgacaactaacatt |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52922828 |
acctaaggaatattgaatgagatttaagaaggaggtcatcggttcgatcctagaaaccaagatttatctctcatctaacgatttactgacaactaacatt |
52922927 |
T |
|
| Q |
308 |
tgaatataaaataataagaagaaatctctccacaagtgaaagcacacacaaaataagnnnnnnnnnnnnnnnnctcacaaattgattatagttcaacatt |
407 |
Q |
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| T |
52922928 |
tgaatataaaataataagaagaaatctctccacaagggaaa--acacacaaaataag-caaaaaaaaaaaaaactcacaaattgattgtagttcaacact |
52923024 |
T |
|
| Q |
408 |
tcatacctacacacgacctctcaacgaaaaatgtattactcaacttataatcttcatacagtttttgcatagacaaaattgcaaaccctctcaacaataa |
507 |
Q |
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| T |
52923025 |
tcatacctacacacgatctctcaacaaaaaatatattactcaacttataatcttcatacagtttttgcatagacaaaattgcaaaccctctcaacaataa |
52923124 |
T |
|
| Q |
508 |
ttgcaatttttacaaggagaaaattacaaaccccgtcaacaacaatttttccattgaaaataatgttgggttgcaagcttctaatatttggaaaca---- |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52923125 |
ttgcaatttttacaaggagaaaattacaaaccccgtcaactacaatttttccattgaaaataatgttgggttgcaagcttctaatctttggaaacagtgg |
52923224 |
T |
|
| Q |
604 |
--------------gttgcaataacatcagaatgggacggtctaacaacaaaatgagttgaaatgagagaagcctaaagaggggtggctatggacgtgac |
689 |
Q |
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| T |
52923225 |
tacacattgaatcggttgcaataacatcagaatgggacggtctaacaacaaaatgagttgaaatgagagaagcctaatgaggggtggctatggacgtgac |
52923324 |
T |
|
| Q |
690 |
atttcatgtagaagcgggtatttcttcattcattgttagtagtaatcatggggattttgtgatggcacaaacaagtcggaagcaagtgaatatgtcaact |
789 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52923325 |
atttcatgtagaagcgggtatttcttcaatcattgttagtagtaatcatggggattttgtgatggcacaaacaagttggaagcaagtgaatatgtcaact |
52923424 |
T |
|
| Q |
790 |
atattgaaggggaggttaccatgttact |
817 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
52923425 |
atattgaaggggaggttaccatgttact |
52923452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 833 - 906
Target Start/End: Original strand, 52923939 - 52924013
Alignment:
| Q |
833 |
ttgaaattagtctgtcgtaagaattttgcta-gcttatttgtggcgaaaactagcattattcttactacaaaata |
906 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52923939 |
ttgaaattagtcggtcgtaagaattttgctaagcttatttgtggcgaaaactagcattattcttactacaaaata |
52924013 |
T |
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