View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-8-Insertion-16 (Length: 368)
Name: NF2911-8-Insertion-16
Description: NF2911-8
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-8-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 26563180 - 26562815
Alignment:
| Q |
8 |
gtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagt |
107 |
Q |
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| T |
26563180 |
gtttgtgggtgtaagattgagtattttggtggcttcctccaaaacccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagt |
26563081 |
T |
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| Q |
108 |
atgttagtgccgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttgg |
207 |
Q |
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| T |
26563080 |
atgttagtgctgatgactcctgtattgagtgccatcactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttgg |
26562981 |
T |
|
| Q |
208 |
atgcaaagtaaggtgctacaagtgcagcacctgatctt---ccccaacctgaagacatgttc------accattaaaggtatgaagtgcctcaacacatt |
298 |
Q |
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| T |
26562980 |
atgcaaagtaaggtgctacgagtgcagcacctgatcttatccctccctcttcattcttgttctttttaaccatcaaagaaatgaagtgcctcaacacatt |
26562881 |
T |
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| Q |
299 |
ggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctt |
364 |
Q |
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| T |
26562880 |
gacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatctt |
26562815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 26560414 - 26560672
Alignment:
| Q |
15 |
ggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttag |
114 |
Q |
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| T |
26560414 |
ggtgtaagattgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagcatgttag |
26560513 |
T |
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| Q |
115 |
tgccgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaa |
214 |
Q |
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| T |
26560514 |
tgttgatgacccctggattgagtgccaccactgccattactttaggcaactcttcaacaacagacttggtaagtccttcaattgcccatttggatacaca |
26560613 |
T |
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| Q |
215 |
gtaaggtgctacaagtgcagcacctgatcttccccaacctgaagacatgttcaccatta |
273 |
Q |
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| T |
26560614 |
gtaaggtgctacaagtgcagcaactgatcttccccaacctgaagacatgttcactatta |
26560672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 24889873 - 24890131
Alignment:
| Q |
15 |
ggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttag |
114 |
Q |
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||||||||||||||||| || ||||||||||| || |||||||||||||||||||| | || |||||||||||||| ||||| || ||||| |||| || |
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| T |
24889873 |
ggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagcgatgaggaagcaccatagcatgaagcaagcatgtcag |
24889972 |
T |
|
| Q |
115 |
tgccgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaa |
214 |
Q |
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|| ||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| | |
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| T |
24889973 |
tgttgatgactcctggattcagtgccactactgccattcctttaggcaactcttcagcaacagacttagtgagtccttcaattgcccatttggatgcaca |
24890072 |
T |
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| Q |
215 |
gtaaggtgctacaagtgcagcacctgatcttccccaacctgaagacatgttcaccatta |
273 |
Q |
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| T |
24890073 |
ataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactatta |
24890131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 26560702 - 26560799
Alignment:
| Q |
267 |
accattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctt |
364 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26560702 |
accatcaaaggtatgaagggcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctt |
26560799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 53 - 261
Target Start/End: Complemental strand, 56437152 - 56436944
Alignment:
| Q |
53 |
ccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgccgatgactcctgtattgagtgccaccactgccatt |
152 |
Q |
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||||||||| ||||||||| | ||||| | ||||||||| ||||||| ||||| |||| |||| |||||| || | ||||||||| || || |||||| |
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| T |
56437152 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
56437053 |
T |
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| Q |
153 |
cctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacaagtgcagcacctgatcttccccaac |
252 |
Q |
| |
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|||| || ||||||| ||| |||||||| |||||||||||||| |||||||||||||| ||||||| || |||||||| ||||| ||||||||||||| |
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| T |
56437052 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaac |
56436953 |
T |
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| Q |
253 |
ctgaagaca |
261 |
Q |
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| T |
56436952 |
cagaagaca |
56436944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 24890163 - 24890258
Alignment:
| Q |
269 |
cattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctt |
364 |
Q |
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||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
24890163 |
cattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatctt |
24890258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 56436896 - 56436811
Alignment:
| Q |
279 |
atgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctt |
364 |
Q |
| |
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||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
56436896 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatctt |
56436811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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