View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-8-Insertion-17 (Length: 172)
Name: NF2911-8-Insertion-17
Description: NF2911-8
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-8-Insertion-17 |
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| [»] scaffold1171 (1 HSPs) |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 9944249 - 9944088
Alignment:
| Q |
8 |
aatattgctcatctattccaccatgaatcagttccagagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttaca |
107 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
9944249 |
aatatttctcatctattccaccatgaatcagttccgaagccttattcttagccctacaaagcttaaagtgactcaacataactccccacttatttttaca |
9944150 |
T |
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| Q |
108 |
agttgattgcaattccttaagtttcataccagatgagagtttcagaattggtatcagtttct |
169 |
Q |
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| T |
9944149 |
agttgattgcaattccttaagtttcataccagatgagtgtttcagaattggtaccagtttct |
9944088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 29921678 - 29921804
Alignment:
| Q |
9 |
atattgctcatctattccaccatgaatcagttccagagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttacaa |
108 |
Q |
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| T |
29921678 |
atattgctcatctattgcaccatggataagttttaaagccttcttcttagccctatatatctgatagcttctcaacatcactccccacttatctttacaa |
29921777 |
T |
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| Q |
109 |
gttgattgcaattccttaagtttcata |
135 |
Q |
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| T |
29921778 |
gatgcttgcaatcccttaagtttcata |
29921804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 3343453 - 3343510
Alignment:
| Q |
8 |
aatattgctcatctattccaccatgaatcagttccagagccttattcttagccctata |
65 |
Q |
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| T |
3343453 |
aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata |
3343510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1171 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1171
Description:
Target: scaffold1171; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 184 - 240
Alignment:
| Q |
9 |
atattgctcatctattccaccatgaatcagttccagagccttattcttagccctata |
65 |
Q |
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||||||||||||||| |||||||| || ||||| | |||||| |||||||||||||| |
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| T |
184 |
atattgctcatctatgccaccatggataagttctaaagccttcttcttagccctata |
240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20590416 - 20590472
Alignment:
| Q |
9 |
atattgctcatctattccaccatgaatcagttccagagccttattcttagccctata |
65 |
Q |
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||||||||||||||| |||||||| || ||||| | |||||| |||||||||||||| |
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| T |
20590416 |
atattgctcatctatgccaccatggataagttctaaagccttcttcttagccctata |
20590472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 25244 - 25301
Alignment:
| Q |
8 |
aatattgctcatctattccaccatgaatcagttccagagccttattcttagccctata |
65 |
Q |
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|||||||||||||||| ||||||| || ||||| | |||||| |||||||||||||| |
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| T |
25244 |
aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata |
25301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 17099177 - 17099120
Alignment:
| Q |
8 |
aatattgctcatctattccaccatgaatcagttccagagccttattcttagccctata |
65 |
Q |
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|||||||||||||||| ||||||| || ||||| | |||||| |||||||||||||| |
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| T |
17099177 |
aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata |
17099120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 14767129 - 14767073
Alignment:
| Q |
9 |
atattgctcatctattccaccatgaatcagttccagagccttattcttagccctata |
65 |
Q |
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||||||||||||||| ||||||| || ||||||| |||||| ||||||| |||||| |
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| T |
14767129 |
atattgctcatctatggcaccatggataagttccaaagccttcttcttagtcctata |
14767073 |
T |
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